Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2145 273 4e-68 seq769 221 2e-52 >seq2145 Length=220927 Score = 273 bits (302), Expect = 4e-68 Identities = 592/874 (68%), Gaps = 35/874 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || | || ||| | ||| ||||||||||||||| || | | |||||| || Sbjct 135266 ATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCCAGCTTCTGGACTGCG 135207 Query 42345 GAGGAGATTGACCTGGCCAAGGAC---ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 || ||| | ||| ||| | ||| | || | | |||| | || | || ||||| Sbjct 135206 GAAGAGCTGGACTTGGTACACGACCTCAAGGACTG--GGGAAAC-CTCACAGACAACGAG 135150 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 ||| |||| || | |||||||||| |||||| ||| ||||| || || ||| Sbjct 135149 CGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAG 135090 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGG 42520 ||| |||||| | || | || || || || || | | ||||| || ||||||||||| Sbjct 135089 AACTTGGCCATGAACTTTAGCAATGAAGTACAAGTGCCT-GAGGCTCGTTGCTTCTACGG 135031 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACAC 42577 ||||||||| ||||| |||||| | ||||| ||||||||| | ||||||| |||| Sbjct 135030 CTTCCAGATTGCCATTGAGAACATCCACTCAGAGGTGTACTCG---CTGCTCATTGACAC 134974 Query 42578 GTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG 42637 ||||||| ||| | || || || ||| | || || ||||| || || || Sbjct 134973 GTACATCAAGGACGCTGTGGAAAAGGACCACCTGCTGCGTGCAATTGAGACCATCCCGTG 134914 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG----CAACGT 42693 | | ||||||||| |||||||| | ||| ||| ||||| | | | Sbjct 134913 TGTGACCAAGAAGGCGAGTTGGGCGCTGAGATGGTGCGA----CCCGAAAGTGTCCTCAT 134858 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 | ||| | || | || || | || || ||||| ||||||||||||||| |||| Sbjct 134857 ACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTT 134798 Query 42754 CCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 ||||||||||||||||||| || ||| || ||||| || || | |||||| ||||| Sbjct 134797 GCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCTGGTCTGAGCTTCTCCAACGAG 134739 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 |||||||| | || || || |||| | |||||||| || || ||| ||||| | Sbjct 134738 CTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGA---AG 134682 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 || | ||||| || || |||| || | | || ||| || || ||| ||||| Sbjct 134681 CTGGTGACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGATC 134622 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 || | |||||| | | | ||||| || ||| ||| ||||||||||| | ||| Sbjct 134621 GAACACGAGTTCGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTC 134562 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGT----GCCAGATGGGTCTCAG 43048 |||||| ||||||| ||| ||| || |||| || |||| || | || ||| || Sbjct 134561 ATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAG 134502 Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 |||||||| | ||| || |||| ||||| | ||||| | ||||||| Sbjct 134501 ----ATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAA 134446 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||||||| ||||||||||| || | ||| ||| Sbjct 134445 GACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 134412 >seq769 Length=43651 Score = 221 bits (244), Expect = 2e-52 Identities = 882/1370 (64%), Gaps = 50/1370 (4%) Strand=Plus/Plus Query 244081 CAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 ||||| | ||||||| | ||||||||||| ||||||||||| | ||| | |||| Sbjct 40068 CAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGA 40127 Query 244141 GCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCAT 244200 | ||| ||| ||||| ||| | || || || ||||| ||||| ||| |||||||| Sbjct 40128 GGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCAT 40187 Query 244201 GGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTC 244257 |||| ||||| || || | || ||||| ||| || | || | ||| | Sbjct 40188 CGGCGCGACCAGGAGCGAATTGCGCAGGCCGT---TCTTGACCACCTTCTCCTTAAGCGC 40244 Query 244258 GTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAG 244317 ||||||||||| | ||| |||| || ||| | ||||||| || ||||| | Sbjct 40245 AGCCCAGTCCCACA-GACCG-GAGGAAGGCG----TGACGTCCCACATATCGAACTGGAA 40298 Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 | ||||||||| | || |||| | | ||| ||| || || | |||||| Sbjct 40299 GATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAG 40358 Query 244378 CTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 || || | | || | | ||||||||||||||||||||||| ||||||| | | Sbjct 40359 -TTCCATCGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCT 40417 Query 244437 CGCGGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCC 244494 | || |||| ||| | ||| | | | |||| | ||||| |||| || || || Sbjct 40418 CACGCGCCT--CCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCC 40475 Query 244495 CTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTTCGGGCAC 244551 |||||| || || || | || | ||| ||| ||||||| ||| || || || Sbjct 40476 CTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGA---GCCTCAATAAC 40532 Query 244552 GGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTC 244611 |||||| ||||| ||||||| |||||||| |||||||| ||||||| |||||| || Sbjct 40533 GGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACCTC 40592 Query 244612 GGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCA-CAAACT 244670 |||| || ||| | || || ||| | |||| | |||| Sbjct 40593 ATACAGCTTCTTGTAGTTGAACACG------------GCGTT-------CTCAACGAACT 40633 Query 244671 CGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGA 244730 | ||| || ||| |||| |||||| |||||||| || || | ||||||| | Sbjct 40634 TGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACTTCATCGGGCGACGTGTACTCCA 40693 Query 244731 CAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG 244790 | || ||| | ||| || | || ||||| |||| ||| || ||||||||| Sbjct 40694 TCACTTCACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGC 40753 Query 244791 CGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850 |||| |||||||||||| |||||||| ||| | || ||||| | ||| ||| | || | Sbjct 40754 GGTTGGCGGCGTCCTTGTACAGCATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAA 40813 Query 244851 CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 | ||| || | ||| |||| ||| |||| || ||| || |||||| Sbjct 40814 TAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACT 40873 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970 |||| | ||||||||| |||||| ||||| ||| || ||| | || | Sbjct 40874 TCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTATAGACC-GGGAGCCTCGTTG 40932 Query 244971 GG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 || || | | |||||||| ||| | ||| || | || |||||| || || || | | Sbjct 40933 GGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACC 40992 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGC 245089 || || || | ||| | ||| | | | ||| || ||| |||||| | || Sbjct 40993 CACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAAA 41052 Query 245090 TCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGC 245149 ||||| || ||||| || || ||||||| || |||| || | || | | || Sbjct 41053 TCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTG 41112 Query 245150 CGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGG 245208 || || || ||||||||||| ||| | || |||| || | ||||| | || Sbjct 41113 CGTTTACCTCCACCCTGGTCCACGTATCGTGCCG-TATCGTTAAACACTCGCAGCATGGG 41171 Query 245209 CACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTT 245268 | |||||||| || |||||| ||||| ||||||| | | | | || ||| Sbjct 41172 GATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTT 41231 Query 245269 GCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGT 245328 | || ||||| | || || || |||||||||| || || || | || Sbjct 41232 GTGCATACTGATGCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGT 41291 Query 245329 GTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG 245388 ||| ||||| || || ||| || |||| | || ||||| || |||| || Sbjct 41292 GTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTG 41351 Query 245389 -GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 || | ||| | | | | |||||||| |||||| |||||||||| ||| Sbjct 41352 TGGACGTGGAG-TACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAG 41400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944305794000800