Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq442 96.9 3e-15 seq2557 91.5 1e-13 >seq442 Length=77766 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||| || ||||||||||||||||| |||||||| || | Sbjct 69839 ACCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 69780 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || | || || |||| |||| |||||||| || || ||||| |||||||| || Sbjct 69779 CAGAGTG-CGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 69726 >seq2557 Length=41672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 20/240 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| ||||| || ||||||||| |||||||| || || Sbjct 14102 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTC-GCT 14044 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || ||||| |||||||| || ||| Sbjct 14043 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 13984 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || || ||||| ||||| |||| ||||| | || | || ||| | Sbjct 13983 GATGCCTTCCTTGTCTTGGATTTTCTGCT---------TCACATTGTCGATTGAGTCGGA 13933 Query 34080 ---------TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 |||| ||| || || || || || ||||| ||||||||||| ||||| || Sbjct 13932 AGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTT 13873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397048705069660