Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2096 149 1e-30 seq2145 116 8e-21 seq2750 87.8 4e-12 >seq2096 Length=20288 Score = 149 bits (164), Expect = 1e-30 Identities = 679/1057 (64%), Gaps = 51/1057 (5%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| ||||| || ||||||| ||||| || ||||| ||| ||| || Sbjct 14502 CTCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTAGGCGTTGGCAGTCTCGTCGAG 14561 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || || || ||||| |||||||| ||||| || |||||||| | |||||| || || Sbjct 14562 GTGCTCTTCAATGTGATGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTG 14621 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || | ||| |||||| ||| | | ||||| |||| ||| || || || Sbjct 14622 CTTCCATACCGTACCGATGGTGGGTTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGA 14681 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAG------CGATACCTG 333547 || || ||||| || ||| | ||| |||| | || ||| || ||| Sbjct 14682 CTTACCGGCACCGTTGGGGCCAAGCACGGCAATACGCGATGACAGAGCGCACGTCACC-- 14739 Query 333548 GGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 | | | |||| || | | |||| || || || |||| | | ||| Sbjct 14740 -GAAATGTTGTTGATCGACG----GTTTGTCACGGCCAGGGTACTGGTAGGT-ACAGTTG 14793 Query 333607 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 333665 || || ||||||| |||| |||| | | ||||| || ||||| ||| Sbjct 14794 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGGG 14853 Query 333666 AACTTCCACGTG---GTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 333722 ||| | || || || | ||| || ||||||| | | || || | Sbjct 14854 AACGTGAACCTGAAGGTAGCAGCCTCC---AGCTCGTAGTAGGCCTTGGCCTCAGGCTTC 14910 Query 333723 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 333782 || |||||||| ||| || || |||||||| |||||||||| || | ||||| Sbjct 14911 ACCTCCACGAACTTGGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGGGTC---TCGTAG 14967 Query 333783 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 333842 || || || || || || | ||| ||||| | ||||||||| ||||| || | || | Sbjct 14968 TGAATGATGTTCGTACAGACCGTGTCAAGGAAGCTGGAGTCGTGGGACACCATGATGCTC 15027 Query 333843 GAAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACAGAAA 333900 | |||| | ||||| ||||||| ||| || |||||| ||||| ||| | Sbjct 15028 GTCACGTTCGGCAGGTTCGTCAGGTAGTTC--TCGAGCCACGCAACGTTCTTGACATCCA 15085 Query 333901 GATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 333960 ||||| |||||||| |||||||| || | | || ||| | ||||| ||||| || | Sbjct 15086 AGTGGTTCGTCGGCTCATCAAGAAGCAGAATGTCGGCCTTCTGAAGCATAGCACGGGCCA 15145 Query 333961 GAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTG---GGGCAGATTGGCGCT 334017 | | |||||||| ||||| || || ||||| ||| | | |||| ||| || Sbjct 15146 GCTCCAGTTTCATCTTCCAACCACCCGAAAGGGTGCCCACAGCCTGGGC---TTGCATCT 15202 Query 334018 CAATATCAAAGCCAAC--CGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 334075 || ||| | || || | || || |||| || | |||| | ||| Sbjct 15203 CAGCGGTGAAGTCCACGCCGGTA--AGCGTGTCAACGACCTCCTGGCGAGG---AGTGT- 15256 Query 334076 TTCCTTTACTTGTTCATC--ATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGAC 334133 |||| | | ||||| | || |||||||| | | || || | | || || Sbjct 15257 --CCTTCAGGTCCTCATCGAACAGG--ATGAAGTCCACAACAGACAGCTCGGCCTCCGAA 15312 Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATC-CGCAGAGGGGAACCCTTC 334192 | | | | ||| || ||| | |||| |||| | || ||| || ||||| || || Sbjct 15313 GCCTGCAAGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCGCGC-GACGGGAAGCCGTC 15371 Query 334193 AAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACA 334252 |||||| ||||| |||||||||||| || || || ||||| ||||| || || || Sbjct 15372 AAGCTGGCCGTTGGAAATAGCGCGCATAAGCGTAGACTTACCGCAACCGTTGGGACCGCA 15431 Query 334253 CAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCC 334312 ||||||||| |||| ||||||||||| | || | |||||||| ||||| | || Sbjct 15432 CAGACCGTAACGGTGGCCACGCTTCAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACC 15491 Query 334313 ACCATATGCCAGAGAAAATTCACAATCACACAGATCC 334349 ||| || || || || || ||||| | || || ||| Sbjct 15492 ACCGTAAGCGAGCGAGAACTCACAGTTGCAAAGGTCC 15528 >seq2145 Length=220927 Score = 116 bits (128), Expect = 8e-21 Identities = 258/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 || ||| ||||||| ||||| ||| ||| | |||||||| || | | || ||| Sbjct 134801 TTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAAC 134742 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| |||||||||| || || || | ||| | | || | | || |||| || ||| Sbjct 134741 GAGCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAG 134682 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || || |||||| || | | || || | | || ||| || || || | | Sbjct 134681 CTGGTGACCAAGCTGCCGGA-GCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGAT 134623 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 |||| | || ||| | ||||| | | ||| ||| || ||||||||||| | || Sbjct 134622 CGAACACGAGTTCGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCT 134563 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | |||||||| || ||||| || |||||| | | |||||||| || | Sbjct 134562 CATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTG-TGTCCA 134504 Query 243645 AG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 || | |||||| ||||||||| |||| || ||||| | || || || || || || | Sbjct 134503 AGATCTACAACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGA 134444 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 | ||||||||||| |||||||| Sbjct 134443 CCAACTTCTTCGAGAAGCGTGT 134422 >seq2750 Length=77611 Score = 87.8 bits (96), Expect = 4e-12 Identities = 189/281 (67%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 297436 TGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTG 297495 ||| || || || || | ||| ||| |||||| || || || |||| | || ||||| Sbjct 15925 TGTAAAGATGTAACGAGGACTAGCGGCATCCTTGCCTCCTTGTAATCGGGTGCCAAACTG 15866 Query 297496 GCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCAC 297555 ||| || ||| || | |||||| |||||||| ||||| || | ||| || Sbjct 15865 GCCTGATGGGTACAGTAAGGGAAGATTATTGGAACCGACATAGTCCTGCGCCATGTTAAC 15806 Query 297556 GATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCT--CTGCAACGTAA 297613 || ||| |||| || || ||||| ||||||||||| | |||| ||||| ||| Sbjct 15805 AATCGTCGAGTGCAACGAAGCCTCGCCGTGGTGATAGGCCGTGTGCTCACTGCA--GTAG 15748 Query 297614 CCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATC 297673 || | ||| || ||||| || || ||| | |||||||| | || ||| | Sbjct 15747 CCCGCAAGCTGGGCCACCTTGACCTCACGCGTAAGCTTGCGCTTCAGGCATGCATAGAGA 15688 Query 297674 ACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 297714 || || || || ||| |||| ||||||||| || ||||| Sbjct 15687 ACCTTGCGCTGCGAAATCTTGAGACCATCAACCACTGACGG 15647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102840010260500