Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq769 298 5e-76 >seq769 Length=43651 Score = 298 bits (330), Expect = 5e-76 Identities = 1083/1689 (64%), Gaps = 39/1689 (2%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || |||||||| || || || || ||||| |||||||||| ||| || Sbjct 41390 GCCACCCCCACGCTGTTCAATGCTGGTACTCCACGTCCACAATTGTCTTCGTGCTTCTTG 41331 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| || || |||| |||| || || | |||||| | Sbjct 41330 TTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTGCGTGC 41271 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | ||||| || || || |||||| | ||| || | || || | | Sbjct 41270 ATCTCCAAGTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACTAACAGC 41211 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || ||| | ||||||||| || |||| ||||| || || || ||| Sbjct 41210 TACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGTGTTTAAC 41151 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | |||| || ||||||||||||||||| || | | ||||| || || ||| | ||| Sbjct 41150 GATACGGCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCGATTTAT 41091 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || || || |||||||| || ||| | ||| | || |||| |||||||| || ||| Sbjct 41090 CTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAACCATGGTAAC 41031 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||| | ||||| ||||| |||||||| || || || ||||| Sbjct 41030 GAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTGTTCATGAAG 40971 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || ||| || | |||||| | || |||||||| || |||||| || | | Sbjct 40970 CGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTATAC 40911 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || || ||| | | || |||| ||| || ||||| | ||| || Sbjct 40910 GAGTGCTGGGGAGAG-GAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGC 40852 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| || ||||| |||||||| || |||||| ||| | ||||| Sbjct 40851 CCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGAC 40792 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| ||| | ||| ||| ||||||| | | |||| |||||||||||||||| |||| Sbjct 40791 GGGCGTGCCTTTCATGCTGTACAAGGACGCCGCCAACCGCAAGTCCAACCAGCAGAACCT 40732 Query 94551 CGGGGTGAT---CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| ||| | |||| || ||||| || | | ||||| || || || || Sbjct 40731 CGGCACGATTCGCTCGAGC---AACTTGTGCTGTGAAGTGATGGAGTACACGTCGCCCGA 40675 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 || | || ||||| ||| ||| ||| | || ||| ||||| |||| | Sbjct 40674 TGAAGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGT-TGAGA-----A 40621 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGTC- 94725 | || |||| | || |||| | ||| | || |||| || || Sbjct 40620 C---------GCCGTGTTCAACTACAAGAAGCTGTATGAGGT---CGTCAAGG-TGATCA 40574 Query 94726 --TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 |||||||||| ||| |||||| |||| ||||||||| ||||| || | Sbjct 40573 CACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATT 40514 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || || || ||||| | |||||||| | | Sbjct 40513 CCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCC 40454 Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAA 94903 | ||| | | | ||| | || ||| | | || ||| || ||||| | Sbjct 40453 TCATGGACTTTGCGTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGA 40394 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC 94963 ||| || |||| | ||| | || | | |||||| |||| || || Sbjct 40393 CCATCTACTACGCTTCTATGGAGACGTCGATGGAACTGGCCA---CGGAATTGGGCCCGT 40337 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGGT 95022 |||| | |||| || ||| ||| | | |||| || || |||||||| | |||| Sbjct 40336 ACGAGACTTTCCAGGGTTCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGGAC 40278 Query 95023 GTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 || | || |||| ||||||| ||||||| || || | | || |||| || Sbjct 40277 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 40218 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || || || |||| || || || || ||||| ||||| || ||||| |||||||| Sbjct 40217 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 40158 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 || || |||||||| ||||||| |||||||||||| |||||||| | || ||||| || Sbjct 40157 GGTAATAACGAGTCTATCGAACCGTTCACCTCCAACATGTACAACCGCCGCGTGCTTGCG 40098 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || || || || | |||||| |||| | || |||| |||||||||||| Sbjct 40097 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 40038 Query 95260 GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAA 95319 | | |||| ||||| | | | | ||| || || ||||| | Sbjct 40037 GCTCCTGAGGTGCGTAACCAGATCTTGAATGACGGCGGTTCGGTGCAGAATGTGAGCTCC 39978 Query 95320 ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATA 95379 || ||| | || |||||| | |||||||| |||||||||||| |||| ||| Sbjct 39977 ATTCCGAACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGTCGATT 39918 Query 95380 CTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNN 95439 || |||| | || | || || ||| |||||| ||||| Sbjct 39917 CTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAACATTCAC 39858 Query 95440 ATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGT 95499 || ||||| || | | || | || || ||| || |||| ||||| ||||| Sbjct 39857 ATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAGAAGGGG 39798 Query 95500 CTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTCGCC 95559 |||||||| || ||||| || |||| | || || || ||| |||| |||||| || Sbjct 39797 CTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCTGACGCCATCCAGTTCACC 39738 Query 95560 CTAGAAAAG 95568 | || ||| Sbjct 39737 GTGGACAAG 39729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494705699166800