Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2557 131 2e-25 seq2145 122 9e-23 seq1410 111 2e-19 >seq2557 Length=41672 Score = 131 bits (144), Expect = 2e-25 Identities = 154/205 (75%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 9822 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 9881 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || ||||| ||||| |||||| || || | | Sbjct 9882 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACA 9941 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||||| | |||||| |||| ||| | || || |||||||| || || Sbjct 9942 TTG-TCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTT 10000 Query 138600 TACAAAAATCTGCA---TGGCTTAT 138621 ||||| ||||||| |||||||| Sbjct 10001 CACAAAGATCTGCATCTTGGCTTAT 10025 Score = 131 bits (144), Expect = 2e-25 Identities = 148/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 14297 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 14238 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || ||||| ||||| |||||| || || | | Sbjct 14237 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACA 14178 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||||| | |||||| |||| ||| | || || |||||||| || || Sbjct 14177 TTG-TCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTT 14119 Query 138600 TACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 14118 CACAAAGATCTGCATG 14103 Score = 129 bits (142), Expect = 6e-25 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 14069 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCG 14010 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || ||||| ||||| |||||| || || | | Sbjct 14009 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACA 13950 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||||| | |||||| |||| ||| | || || |||||||| || || Sbjct 13949 TTG-TCGATTGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTT 13891 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 13890 CACAAAGATCTGCAT 13876 >seq2145 Length=220927 Score = 122 bits (134), Expect = 9e-23 Identities = 291/437 (67%), Gaps = 11/437 (3%) Strand=Plus/Minus Query 52405 TGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACA 52464 |||| ||||| || ||||| | || || || ||| |||| | ||||||| | Sbjct 134842 TGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGC 134783 Query 52465 TTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACG 52524 | || | | || | ||||| || |||| ||| ||||||| | || || || | Sbjct 134782 TCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATCAGTCGTGATG 134723 Query 52525 AAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGG 52584 |||| ||||||| |||||||| || || | ||| || || |||||| || || Sbjct 134722 AAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACC---AAGCTGC 134666 Query 52585 ATTCGGA----CACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTT 52640 |||| | | | ||| || || || || ||| |||||| | ||||| Sbjct 134665 ---CGGAGCAGCGTGTGCACGAG-ATTATCCGTGACGCTGTGAAGATCGAACACGAGTTC 134610 Query 52641 TTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTAC 52700 | | | | |||| || || |||||| | ||||||||| || | ||||||| ||||| Sbjct 134609 GTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGCTCATGTGCCAGTAC 134550 Query 52701 ATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCT 52760 || ||||| ||||| || || ||| || ||| || | | ||| || ||||| Sbjct 134549 ATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCAAGATCTACAACGTC 134490 Query 52761 CGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAG 52820 || |||||||| | ||| ||| || || || |||||||||||||||| |||||| Sbjct 134489 AAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACCAACTTCTTCGAG 134430 Query 52821 AAGCGAGTCGGCGAGTA 52837 ||||| || |||||||| Sbjct 134429 AAGCGTGTGGGCGAGTA 134413 >seq1410 Length=10983 Score = 111 bits (122), Expect = 2e-19 Identities = 149/204 (73%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 138416 TGTTTGACTC---CTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTT 138472 |||||| ||| ||| || ||||||||||| || || || ||||||||| || | Sbjct 2443 TGTTTGTCTCACCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCT 2502 Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 | |||| |||| |||||||| ||||| || || || || || ||||| |||||| | Sbjct 2503 TGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCT 2562 Query 138533 GTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591 | || | |||| || | | |||| | || |||||| |||| ||| | || || || ||| Sbjct 2563 GCTTGACATTG-TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTC 2621 Query 138592 AGAGTTTTTACAAAAATCTGCATG 138615 || || || ||||| ||||||||| Sbjct 2622 AGGGTCTTCACAAAGATCTGCATG 2645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496244844717600