Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2145 172 7e-38 seq769 165 1e-35 >seq2145 Length=220927 Score = 172 bits (190), Expect = 7e-38 Identities = 395/587 (67%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | || ||| | Sbjct 134406 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCAT 134465 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | ||||| |||||||| ||| | || | | ||| |||| | | || Sbjct 134466 GTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAG 134525 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 || || || | ||| |||||||||||| |||| | | |||||||| ||||| || Sbjct 134526 CAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 134585 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | |||||||| ||| | |||| | | || || | |||||| || || | || Sbjct 134586 CTCCACTGGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT 134645 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAA--AGTCTTGAAGAGTTCCACAG-- 127520 |||| | | | | || || ||| || | || ||| |||| | |||| Sbjct 134646 CTCGTGCACACGCTGCTCC---GGCAGCTTG-GTCACCAG-CTTC--GAGTACAACAGAC 134698 Query 127521 ---CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 127577 |||| ||| ||| | ||| || ||||| |||||| || || ||||||| ||||| Sbjct 134699 AAGCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGAC 134758 Query 127578 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 127637 | ||||||||||| |||||||| | |||||| || | ||||| ||||| |||||||||| Sbjct 134759 CAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGA 134818 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTT-GTATCA 127696 | ||||||||| ||||| || | |||||||| | | ||| | ||||| | || Sbjct 134819 TTCCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCG 134877 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 |||| ||| |||||| ||||| || | ||| |||| ||||| || || Sbjct 134878 CACCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGC 134937 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | || | | |||||| | || ||||||||| | || ||||| Sbjct 134938 AGCAGGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAG 134984 >seq769 Length=43651 Score = 165 bits (182), Expect = 1e-35 Identities = 471/715 (66%), Gaps = 17/715 (2%) Strand=Plus/Plus Query 116511 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATA 116570 ||| ||||| | ||||| || || ||||| ||| || |||||||| ||||| | Sbjct 40722 AATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAA 40781 Query 116571 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCA 116629 ||| |||||||| | || | | |||||||| ||| | || | || ||| Sbjct 40782 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACA-----GCTGTTGAGCA 40836 Query 116630 CAG--TGGCGTT--GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCT 116685 | || | | ||| || || || ||||||||| | || | ||| ||||| Sbjct 40837 TTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCC 40896 Query 116686 TCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACC 116744 || ||| |||| ||| | || || || |||| | |||||||| | | ||| | || Sbjct 40897 TCTCCC-CAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCC 40955 Query 116745 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 | |||| || ||||||||||| || || || | ||| || || |||| | || || Sbjct 40956 ATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCACG 41015 Query 116805 A-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 116863 || | || || | | || || || ||||| ||||| || || | | ||| | Sbjct 41016 TGCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAACACATCAG 41074 Query 116864 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTA 116920 |||||||||||||||| || | ||| | ||| |||||||| || ||| |||||| | Sbjct 41075 CGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCA 41134 Query 116921 CATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCAT 116980 | || | ||||| ||||||| || || ||||| || ||||| || | || ||| | Sbjct 41135 CGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGT 41194 Query 116981 TTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCC 117040 | || || || || || | |||| || | ||| || || ||||| || | Sbjct 41195 TCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTC 41254 Query 117041 CTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGT 117100 | |||||||| ||||| || |||| | ||| || | || || || || || |||| Sbjct 41255 CCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGT 41314 Query 117101 CACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGA 117160 || ||| | || | | |||||| |||| |||||| | ||| |||||||| |||| Sbjct 41315 CATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTACCAGCATTGA 41374 Query 117161 AGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 117215 | || || || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 41375 ACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 41429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613485497182800