Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2145 197 1e-45 seq2557 122 9e-23 seq1410 122 9e-23 seq442 93.3 4e-14 >seq2145 Length=220927 Score = 197 bits (218), Expect = 1e-45 Identities = 416/613 (68%), Gaps = 12/613 (2%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| || ||||||||||| |||| || || || | ||||| |||||| || Sbjct 134690 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGA 134749 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | ||| || |||||||| || || || |||||||| || |||| | || ||||| Sbjct 134750 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 134809 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||||| || || ||||| |||| || ||||| | | | || ||| Sbjct 134810 AGAAGAAGATTCCCTCCACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 134869 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | | || ||| | ||||||||| ||||| | | || ||||| || || || | Sbjct 134870 TCGGGTCGCACCATCTCAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 134929 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGG 133183 | || || || || | | || |||| | | | ||| ||||| ||||| Sbjct 134930 TTGCACGCAGCA---GGTGGTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCA 134986 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 ||| |||| || ||||| | |||||| ||||| || || |||||||| ||||| || | Sbjct 134987 GCGAGTACACCTCTGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAACGAG 135046 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGATGCC 133301 |||| ||| || ||||| | || ||| | || | ||| || ||||| |||||||| Sbjct 135047 CCTCAGGCACTTGTACTTCATT-GCTAAA-GTTCATGGCCAAGTTCTCGTTCACGATGCC 135104 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 || |||||||| || ||||||| |||||||||||||| || ||||||||||| | | Sbjct 135105 ATCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAG 135164 Query 133362 GCGCTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 | ||||||| | | | | || | || ||||| ||| || | ||||| || | Sbjct 135165 GTTTCCCCAGTC-CTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGG 135223 Query 133421 CCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 |||| || || |||||||| ||||| ||| | || ||||| || | ||| || | Sbjct 135224 CCTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAACAGCACGAAGC 135283 Query 133481 GGCGGGGGTTTTC 133493 || ||||| || Sbjct 135284 GGTTCGGGTTCTC 135296 >seq2557 Length=41672 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| || ||||| ||||||| ||| | Sbjct 10018 AAGATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCT 9959 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 ||||| | | | | || | ||||||| ||||| || || || |||||| || Sbjct 9958 TCCGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCAT-CCCGCCTGA 9900 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 9899 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 9840 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || ||||||| ||| | | ||||| Sbjct 9839 CAACATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGTCTTCGTGGCGG 9789 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || ||||| ||||||| ||| | || Sbjct 14104 ATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCC 14163 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 ||| | | | | || | ||||||| ||||| || || || |||||| ||||| Sbjct 14164 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCAT-CCCGCCTGACCA 14222 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 14223 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 14282 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || ||||||| ||| | | ||||| Sbjct 14283 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGTCTTCGTGGCGG 14330 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| || ||||| ||||||| ||| | Sbjct 13873 AAGATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCT 13932 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 ||||| | | | | || | ||||||| ||||| || || || |||||| || Sbjct 13933 TCCGACTCAATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCAT-CCCGCCTGA 13991 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 13992 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTA 14051 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || || || ||||||| || || | || ||| Sbjct 14052 CAACATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGTGGC 14103 >seq1410 Length=10983 Score = 122 bits (134), Expect = 9e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| ||||||| ||| | | Sbjct 2644 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 2585 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | ||||||| ||||| ||||||||||| | ||||| Sbjct 2584 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCACCTGACCAG 2525 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| ||||| || ||||||||| Sbjct 2524 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAAC 2465 Query 38424 ATCCAAAAGG 38433 ||||| |||| Sbjct 2464 ATCCAGAAGG 2455 >seq442 Length=77766 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/127 (79%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 38346 GGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 ||||| |||||| ||||| ||||| || || | ||| ||||| |||||||| |||| || Sbjct 69714 GGAAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCG 69772 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGA 38463 ||| || |||||||||||||| ||||| ||| ||||| || ||||||||||| || Sbjct 69773 CACTCTGTCGGACTACAACATCCAGAAGGAGAGC-ACGCTCCACCTGGTGCTGCGTCTGC 69831 Query 38464 GAGGCGG 38470 | || || Sbjct 69832 GTGGTGG 69838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155106387200