Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq769 158 2e-33 seq2145 125 9e-24 seq1591 89.7 6e-13 >seq769 Length=43651 Score = 158 bits (174), Expect = 2e-33 Identities = 347/514 (68%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| |||||| || || || || ||||| |||||||| ||| | || ||| |||| Sbjct 41399 TTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACTCCACGTCCACAATTGTCTTCG 41340 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||| | | || | |||| || || || | |||||||| | |||||| | | Sbjct 41339 TGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAG 41280 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 ||||| ||||| |||||||| || || || || || || || | || |||| Sbjct 41279 TGTGCGTGCATCTCCAAGTGGGCGGGAGGCATTGGCATCAGTATGCACAACATCCGAGCT 41220 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | || || | || || || || || | || || || || ||||| || Sbjct 41219 ACTAACAGCTACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGA 41160 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATC 112001 || ||||||| || || || || || |||| | ||| || ||||||||||| | Sbjct 41159 GTGTTTAACGATACGGCACGATACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTT 41100 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || | ||||| || || |||||||| ||| | | |||||| | || ||||| ||| Sbjct 41099 GCGATTTATCTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATTTGCGCAAGAAC 41040 Query 112062 CAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCT 112120 || ||| | || | || | |||| || || | |||| ||||| ||| | || ||||| Sbjct 41039 CATGGTAACGA-GCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCT 40981 Query 112121 CTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACC 112180 ||||||||| | || |||| | |||||| ||| | | || ||||| || |||| || Sbjct 40980 GTTCATGAAGCGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCC 40921 Query 112181 CGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGA 112213 |||||| | ||| ||| | ||| |||||||| || Sbjct 40920 CGGTCTATACGAGTGCTG-GGGAGAGGAGTTCGA 40888 >seq2145 Length=220927 Score = 125 bits (138), Expect = 9e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | ||||| || ||| ||||| ||||||||||| || ||||| ||| | Sbjct 134852 GAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCC 134793 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||||||||||| ||||||||||| ||||| |||||||||||||||| ||| Sbjct 134792 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATC 134733 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| || || | ||| ||| ||||| Sbjct 134732 AGTCGTGATGAAGGTATGCACACAGACTTTGC 134701 >seq1591 Length=151785 Score = 89.7 bits (98), Expect = 6e-13 Identities = 259/386 (67%), Gaps = 26/386 (7%) Strand=Plus/Minus Query 176702 GGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCG 176761 |||||||||| ||| || | ||||| | |||||||| || || || |||| ||| Sbjct 110430 GGCCAGAAGTGGTGGATGAGATTGATCACCAGACCCTTAATATGACTGCCATCGTGATCT 110371 Query 176762 GCATCCGTCATGATCATGAGACGACCATACCG-AAGC---TCG--GAAACATCTTGATAG 176815 ||| | ||||||||| || | |||||||| |||| ||| || ||| | | | Sbjct 110370 TGATCTGCCATGATCATCAGGTGGCCATACCGCAAGCCTTTCGTGGATTCATAC-GTTTG 110312 Query 176816 TCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTT--GAA-CTCTTGGTTTGAT 176872 || ||| |||| |||||| |||||| |||| ||| ||||| |||| Sbjct 110311 GCCATAC----TTGAGT--CCAAGAA--TCTTGACCACGTTTTGAATCTCTTCGTTTTTC 110260 Query 176873 GTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACA-CTTCCCACGAAGAGGGAAGAC 176931 || || | | || ||||| ||||| | || ||| ||||| || || || || Sbjct 110259 AGGATTTGGGAGTGGCTTGCCTCACGCACATT-TAGCATCTTACCACGCAGCGGAAATAC 110201 Query 176932 ACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATC 176991 |||||||| || | ||||| || | ||||| | || || | ||||| || ||||| Sbjct 110200 ACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCACAGCTACTGTTTTAGCTGAATC 110141 Query 176992 ACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCCGCCTTGTTCGC 177048 ||||||||| | ||| ||||| || |||||| | || || || || | ||| || Sbjct 110140 ACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTTCGCAGTGCCGGCGTGGTTGGC 110084 Query 177049 ATCATCCAATTTGGGAATACCAGTAA 177074 ||| || | || |||||||| |||| Sbjct 110083 ATCGTCTAGCTTTGGAATACCCGTAA 110058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620720441237600