Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq769 152 6e-32 seq260 149 7e-31 seq1591 105 8e-18 seq2145 98.7 1e-15 >seq769 Length=43651 Score = 152 bits (168), Expect = 6e-32 Identities = 1052/1680 (63%), Gaps = 38/1680 (2%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| ||||| ||||| || |||||| ||||| | ||||| || | || ||| Sbjct 39778 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAGCTTG 39837 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 |||||| | || | ||||| ||||||| |||| |||| | |||| Sbjct 39838 CTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCA 39897 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 ||||| || | || ||| | || |||| || | || ||||| || ||||||||| Sbjct 39898 CGATCCGCAGACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 39957 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | ||||| | | |||||| | || || | || || || | |||| || Sbjct 39958 TCCTTGACGTGGTTCGGAATGGAGCTCACATTCTGCACCGAACCGCCGTCATTCAAGATC 40017 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 | | || ||| | ||| | ||| | || | || || | | || | |||| Sbjct 40018 TGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAGGTACTTG 40077 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || || | | ||| || || ||||| ||| ||| ||| ||||| | ||| | ||| Sbjct 40078 TTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGGTGAACGGT 40137 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| | |||| || || || ||||| ||||| || || || || ||||| || || | Sbjct 40138 TCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACC 40197 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAA 109893 || || || || || || ||| | ||| ||| | || |||| || | Sbjct 40198 AGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCAC 40257 Query 109894 CGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCA 109953 |||| | || | | ||||||||||| || | | ||||| ||| Sbjct 40258 AGACCGGAGGA---AGGCGTGACGTCCCACATATCGAACTGGAAGATACCCTTGCTGGCA 40314 Query 109954 GGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT 110013 || ||||||| |||| ||||||||| ||| || ||||| || || | ||| Sbjct 40315 GGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTCCATCGACGTCTCC 40374 Query 110014 AGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCA 110070 | | || | || || ||||| || |||| || |||| || | ||| | Sbjct 40375 ATAGAAGCGTAGTAGATGGTCTCGAAGATATTC---TTGTTGAGCTCACGCGCCTCCGGA 40431 Query 110071 CAGTCGAAGGGAA-GACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACC 110129 | ||||| | || | ||| | || ||| | ||||| || ||||| ||||| | ||| Sbjct 40432 CTCTCGAACGCAAAGTCCATGAGGATGAAAG-CGTCCGCAAGGCCCTGCACACCAATACC 40490 Query 110130 AATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTC 110189 || || || || |||||| || ||||| |||||||| ||||| ||| Sbjct 40491 AACAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTC 40550 Query 110190 GATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATC 110249 ||||||| || || || || | ||| || |||| || || | ||| | Sbjct 40551 GATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACCTCATACAGCTTCTTGTAGTT 40610 Query 110250 GAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACAC 110309 |||| || | || | || | |||||||| || | ||||| | |||||||| Sbjct 40611 GAACA----CGGCG--TTCTCAACGAACTTGGGGAGCGCCACGGACGCCAAGTTGCACAC 40664 Query 110310 AGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTT- 110366 | || || | || ||||| |||| | ||| ||||||||| ||| Sbjct 40665 GGCCACTTCATCG--GGCGACGTGTACTCCATCACTTCACAGCACAAGTTG---CTCGAG 40719 Query 110367 --AATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATG 110424 ||| || | ||||| ||| || || ||| |||| || ||||| || |||||| Sbjct 40720 CGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATG 40779 Query 110425 TATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGG 110484 | || || || || |||| | | ||||| || ||| | | || | Sbjct 40780 AAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTG 40839 Query 110485 ACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCT 110542 | || |||| ||| | ||||| ||||||||| ||| ||| || |||| Sbjct 40840 ATTGTCTTGCGG--GCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCT 40897 Query 110543 GTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCA 110601 ||| | ||| || | ||||| |||| || ||||||||| | ||| || ||| Sbjct 40898 CTCCCCAGCAC-TCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCA 40956 Query 110602 CCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG- 110660 |||| || | |||||||||||| || || | ||||| || |||| | |||||| Sbjct 40957 TTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCACGT 41016 Query 110661 GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGA 110720 ||| | || || | | ||| ||||| ||| | ||||| || || | | ||| | Sbjct 41017 GCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAACACATCAGC 41075 Query 110721 GTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAAC 110777 |||||| ||||| ||||| | || | |||||||| || || || |||||| || Sbjct 41076 GTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCAC 41135 Query 110778 ATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATT 110837 || ||||| || | || || || | ||||| || || || || | ||| || || Sbjct 41136 GTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTT 41195 Query 110838 TGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACC 110897 || || | || | ||| | || || |||| ||| ||| || ||||| || || Sbjct 41196 CGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCC 41255 Query 110898 CGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATC 110957 ||||||||| || ||||||| | | || || ||||||| || ||||| || || Sbjct 41256 CGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTC 41315 Query 110958 TGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAA 111017 ||| |||| | | ||||| ||||||| || ||||| || || || |||||||| Sbjct 41316 ATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTACCAGCATTGAA 41375 Query 111018 GAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGC 111077 || || || || || || |||| | ||| ||||| | ||| || || ||||| Sbjct 41376 CAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGC 41435 >seq260 Length=68776 Score = 149 bits (164), Expect = 7e-31 Identities = 289/418 (69%), Gaps = 13/418 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| |||||||| ||||| || || | | || | || ||||||||| ||||||| Sbjct 3916 ATCTGCCGATCGAATCGACCAGGACGCAAAATGGCCTTGTCTAGAATATCGGCACGGTTC 3975 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| |||| | || || | || |||| | || |||||| ||||| || || Sbjct 3976 GTACCGGCGAGCACCACCACACC---CTCACTCGAGTTGAAACCATCCATCTCAACCAGC 4032 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG--GGCATACC-ACCTGCCGAACGC 11670 |||||||| | || | ||||||||| |||||| | || | | |||| ||| Sbjct 4033 AGCTGGTTCAATGTGTTTTCACGCTCGTCGTTGCCGCCGGAAAAGTTACCTTTGCTACG- 4091 Query 11671 TTCTTAC-CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 | | | | |||||||| || ||||| ||||| || |||||||| ||| || || || Sbjct 4092 TGCGCGCGCAACAGCGTCGATTTCATCAATGAACACAATACACGGAGCGTTCGCTCGCGC 4151 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 || | ||| | ||||| |||||| || || ||||| ||||||||||||| ||| | Sbjct 4152 CTCCTTGAACAAGTCACGCACACGCGACGGACCCACACCGACGAACATCTCAATGAAATC 4211 Query 11790 TGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 || | || | |||||| ||| || || | | ||||||||| | || ||| || | Sbjct 4212 TGAACCGGAGATACTGAA-GAACGGCACGCTGGCCTCACCAGCCGTTGCCTTAGCCAGCA 4270 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | || ||||| |||||||| | ||| | || || ||||| ||||||||| || || Sbjct 4271 GTGTTTTACCTGTACCAGGCGGTCCAACAAGCAGCGCGCCCTTGGGGATCTTCGCCCC 4328 >seq1591 Length=151785 Score = 105 bits (116), Expect = 8e-18 Identities = 123/165 (75%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 ||||||||| || |||||||| || || | ||||| || ||||||| |||||| | || Sbjct 110221 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 110162 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACA---CTTTCCAGACTG 168545 ||| | ||||| ||||||||||||||||| | ||| ||||| || ||| || || Sbjct 110161 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 110105 Query 168546 TGCCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 || || || || | ||| |||||||| | || || ||||| || Sbjct 110104 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGT 110060 >seq2145 Length=220927 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| || | |||||||| ||| ||||||||| || ||||| || ||| Sbjct 134701 GCAAAGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCA 134760 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 |||||||| || | ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 134761 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATT 134820 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 ||||||||| ||||| || | |||||||| Sbjct 134821 CCCTCCACAGCTGCGAATGCCAGAAGACGCTC 134852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588955164974000