Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1410 114 3e-20 seq2409 93.3 9e-14 >seq1410 Length=10983 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | || || ||||||||||| || |||||||| Sbjct 2457 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2516 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || ||||| || || ||||| || ||||| |||||||| || ||| Sbjct 2517 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2576 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 ||| ||||||| ||||| || || || | ||||| || |||| || || || || Sbjct 2577 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2636 Query 195133 ACTTGCAT 195140 | ||||| Sbjct 2637 ATCTGCAT 2644 >seq2409 Length=11226 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCC--CATCTTCGAGCTGCTTAC 195001 |||| ||| || ||||| |||||| | ||| ||| | | |||||||| ||||| | Sbjct 4529 GTGGCCTCGTTCTGAATGTTGTAACATGAAAG--TTCACGATCGTCTTCGAGTTGCTTTC 4586 Query 195002 CTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061 |||| |||| ||| ||||| |||| |||||| ||| || |||||||||||| ||| Sbjct 4587 CTGCAAAGACAAGACGTTGCGTATCTGCAGGAATACCTACTGCGTCTTGAATTTTAAGCT 4646 Query 195062 TGACGTTCTCAATGGTGTC 195080 |||| | ||||||||||| Sbjct 4647 GGACGATGTCAATGGTGTC 4665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109441370890610