Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1410 102 5e-17 seq2557 95.1 8e-15 >seq1410 Length=10983 Score = 102 bits (112), Expect = 5e-17 Identities = 144/197 (73%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| |||||||| || | || | || || ||||| || ||||| || || Sbjct 2457 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2516 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| || ||||| ||||| || | Sbjct 2517 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGAC--AT--T 2572 Query 34914 ATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | ||| | ||| || |||| || ||||| || ||||| || |||||||| Sbjct 2573 GTCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 2632 Query 34970 AAAGATCTGCAT-ATTC 34985 |||||||||||| |||| Sbjct 2633 AAAGATCTGCATGATTC 2649 >seq2557 Length=41672 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||| ||||| ||||| || | || | || ||| Sbjct 9807 ACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 9866 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | || |||||||| Sbjct 9867 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGG 9926 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||||| || || | ||||| || | ||| || |||| || || || || Sbjct 9927 ATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTG 9986 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || |||||||||||||||||||| || Sbjct 9987 CCAGTCAGTGTCTTCACAAAGATCTGCATCTT 10018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||| ||||| ||||| || | || | || ||| Sbjct 14312 ACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 14253 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | || |||||||| Sbjct 14252 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGG 14193 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||||| || || | ||||| || | ||| || |||| || || || || Sbjct 14192 ATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTG 14133 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 14132 CCAGTCAGTGTCTTCACAAAGATCTGCAT 14104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||| ||||| ||||| || | || | || ||| Sbjct 14084 ACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCC 14025 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || |||||||| |||| | || |||||||| Sbjct 14024 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGG 13965 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCAC-CGGC---CTCAACATCGACGGTTATGGT 34948 || ||||| || || || | |||||| | ||| ||| || |||| || || || Sbjct 13964 ATTTTCTGCTTCAC--AT--TGTCGATTGAGTCGGAAGGCTCCACGTCGAGCGTGATAGT 13909 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || || |||||||||||||||||||| || Sbjct 13908 CTTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTT 13873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622403184240