Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1775 89.7 4e-12 >seq1775 Length=13760 Score = 89.7 bits (98), Expect = 4e-12 Identities = 186/275 (68%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 552312 CCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAAT 552371 || ||||| || || | || || | || || | ||||| | || |||| | || Sbjct 8678 CCACTATCGCTCGGACTGGAGACTGCAGGTGGAGTCATGACGACGCTGATCGCGCGTAAC 8737 Query 552372 ACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCT 552431 || || |||||| |||||| | | || || ||||| || ||||| || || | Sbjct 8738 ACCACAGTTCCTTCTAAAAAGACGCAGACGTTCTCGACGTACTCGGATAACCAGCCTAGT 8797 Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 || ||||| | || ||||| ||| | | | ||| || ||| | | ||| || Sbjct 8798 GTGTTGATTCAGGTGTTCGAAGGTGAACGGACGATGACTCGTGACAATCACCTACTGGGC 8857 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCC--TGCTCCTCGTGGAGTACCGCAAATTGAAGTTA 552549 | || ||||| || |||||||| || ||| || |||| |||||||||| || || | Sbjct 8858 AAGTTCAATTTGGACGGTATTCCGCCAATGCGCC--GTGGCATACCGCAAATCGATGTGA 8915 Query 552550 CTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 | |||||||||||||| ||||| ||| | |||||| Sbjct 8916 CCTTCGATATCGATGCGAATGGTATTCTCAATGTG 8950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029146336836700