Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2145 165 2e-35 seq769 132 9e-26 >seq2145 Length=220927 Score = 165 bits (182), Expect = 2e-35 Identities = 490/753 (65%), Gaps = 19/753 (3%) Strand=Plus/Minus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 |||||| || || ||||| |||| ||||| |||||||| ||| |||||| || |||| Sbjct 135154 ACGAGCGTCACTTCATCAAGCACGTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGA 135095 Query 25634 ACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTC 25692 ||||||| || | || || | || ||||| || || | || |||| || ||| Sbjct 135094 ACGAGAACTTGGCCATGAACTTTAGCAATGAAGTACAAGTGCCTG-AGGCTCGTTGCTTC 135036 Query 25693 TACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG 25752 ||||| |||||||| ||||| || || | ||||| |||||||| | ||| || || Sbjct 135035 TACGGCTTCCAGATTGCCATTGAGAACATCCACTCAGAGGTGTACTC---GCTGCTCATT 134979 Query 25753 ---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 |||||||| | |||| | || | || | ||| | |||| || ||| ||| Sbjct 134978 GACACGTACATCAAGGACGCTGTGGAAAAGGACCACCTGCTGCGTGCAATTGAGACCATC 134919 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTAC 25868 || | | | | ||||||| | ||||| ||| ||| | || | | || | | | Sbjct 134918 CCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGATGGTGCGACC-CGAAAGTGTCCTC 134860 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 | ||||| || | || || || ||||||||||| ||||| ||| || || || Sbjct 134859 ATACCCGGAGCGTCTTCTGGCATTCGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTT 134800 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 | ||||||||||||||||| || || |||||| || ||| ||| |||||||| Sbjct 134799 TTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGA 134740 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 ||||||||| | || || ||| | |||| ||| ||||| || ||| | ||| || | Sbjct 134739 GCTCATCAGTCGTGATGAAGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCG---AA 134683 Query 26049 CTTGCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107 || | || || || | || || || || || ||| || |||||| ||| Sbjct 134682 GCTGGT-GACCAAGCTGCCGGAGCAGCGTGTGCACGAGATTATCCGTGACGCTGTGAAGA 134624 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 |||| | ||||| | ||||||||| | Sbjct 134623 TCGAACACGAGTTCGTGAGCGACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGCGC 134564 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227 ||||| |||| |||||||||| ||||| |||| ||||||| ||| || | ||| Sbjct 134563 TCATGTGCCAGTACATTGAGTTCGTGGCAGACCGCCTGCTGTATTCGCTTGGTGTGTCCA 134504 Query 26228 GACTCTACAGTACGCC--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 |||||| ||| | |||||||| |||| ||||| | || || | | || || Sbjct 134503 AGATCTACA--ACGTCAAGAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAA 134446 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTA 26318 |||||||||||| || ||| | || ||||| || Sbjct 134445 GACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 134413 >seq769 Length=43651 Score = 132 bits (146), Expect = 9e-26 Identities = 695/1093 (64%), Gaps = 65/1093 (6%) Strand=Plus/Plus Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGA-----GA 221478 ||||| |||||||||||| ||||| |||||||||| ||| | ||||| ||| || Sbjct 40380 AGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAG-CTCACGCGCCTCCGGACTCTCGA 40438 Query 221479 A-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | | ||| ||| | | |||||| |||| || || ||||| || || ||||| | Sbjct 40439 ACGCAAAGTCCATGAGGA-----TGAAAG-CGTCCGCAAGGCCCTGCACACCAATACCAA 40492 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 || | ||| | | |||||||| | || || ||||| || |||||||||||| Sbjct 40493 CAGGACGGTGACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGA 40552 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | ||||| ||||| | ||||| || || || ||||| |||||||| || |||| Sbjct 40553 TGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACCTCATACAGCTTCTTGTAGTTGA 40612 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 ||| || ||| || || || | || || ||| |||| Sbjct 40613 ACA---------CGGCGT---------TCTCAACGAACTTGGGGAGCGCCACGGACGCCA 40654 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||| ||||||||||| || || || |||| || | || || | ||||| Sbjct 40655 AGTTGCACACGGCCACTTCATCGGGCGACGTGTACTCCATCACTTCACAGCACAAGTTGC 40714 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 | | || || || |||| | || || |||||||| ||||| ||||||||||| | Sbjct 40715 TCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACA 40774 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 |||| || || |||| ||||| | ||| || ||||||| | ||| || | | | Sbjct 40775 GCATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAG 40834 Query 221898 CGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 | | | ||| | | || ||| |||| ||| ||| || ||| Sbjct 40835 CATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAAC---------AGCG 40885 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 | || |||| || || | ||||| || || ||| | | |||||| | || || Sbjct 40886 TCTCGAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAAC 40945 Query 222012 TCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 |||| |||| ||| | | || | || |||||| || ||||| | |||||| || | Sbjct 40946 TCCA---CTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCAT 41002 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || | || | | || ||| ||| || | ||| || | || |||||| |||| Sbjct 41003 AGAACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAAATCCAAGAACT 41062 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 |||| | |||||||||||||| |||||||| | || | | || || || | Sbjct 41063 CAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTC 41122 Query 222189 CACCCTGATCCAC-CATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 ||||||| ||||| ||| | || | |||| || | || || | || | | ||| Sbjct 41123 CACCCTGGTCCACGTATCGT-GCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCG 41181 Query 222248 TTGGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCAG 222305 ||||| ||| ||||| ||||| ||||| || | ||| || | || ||| Sbjct 41182 TTGGA-CGAGCCGTTCGTGCCGCGGATGTA-GC-TGTTAGTAGCTC-GGATGTTGTGCAT 41237 Query 222306 AC--ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || ||||| || || || || || ||||| || || || |||||||| Sbjct 41238 ACTGATGCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATA 41297 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG-AGATT 222422 ||||| || |||||||| |||| | | || || || || || |||| || || Sbjct 41298 AATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACG 41357 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 ||| | | || || || ||||||||||| ||||||| || ||| | ||||| | Sbjct 41358 TGGAGTACCA-GCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGA 41416 Query 222483 GATCGTACGTCTC 222495 | ||||| ||||| Sbjct 41417 GTTCGTAAGTCTC 41429 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 221050 CAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCAT 221109 ||| | || | |||||| ||| | ||| | |||| ||| |||| | || | || Sbjct 40011 CAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTCATCAG 40070 Query 221110 GTGCTTGTTCACCACTTGGAAA-TCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAG 221168 || ||||||||| | | | ||| ||||||| ||||| | | | ||||| ||| || | Sbjct 40071 GTACTTGTTCACGA-TGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGG 40129 Query 221169 TGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGG 221228 ||||||||||||| |||||| || || |||||||| ||||| || || ||||| | Sbjct 40130 TGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCG 40189 Query 221229 GTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 | || ||||| || |||||||| ||| Sbjct 40190 GCGCGACCAGGAGCGAATTGCGCAGGCCG 40218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928811942115200