Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq71 123 7e-23 seq863 111 5e-19 >seq71 Length=133946 Score = 123 bits (136), Expect = 7e-23 Identities = 263/385 (68%), Gaps = 16/385 (4%) Strand=Plus/Minus Query 302490 GTCAATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTAC 302546 ||| || || || ||||| || ||||| |||||||||| | |||| ||||| || Sbjct 126052 GTCCATACCATCCTCGCCATAAAGGAAT--TGAATGATTTCGC-CTTGCGCATTTCGAAC 125996 Query 302547 GGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATA 302606 || ||| || | |||||| | |||||| ||| | | || ||||||||||| Sbjct 125995 CGTACCATCGTATCTCGTCATAACGGACTCCATAGCCTTCACCAGTCGGCGCTGAATATA 125936 Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 || ||| || || || |||||||||||||| | ||| ||||||||||||| || || Sbjct 125935 TCCCGTTTCAGCGGTCTTGACAGCTGTATCAATCAAACCTTCACGACCACCCATGGCGTG 125876 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| | || || ||| | | || |||| ||||||||||| Sbjct 125875 GAAGAAGAACTCCTGTGGGGTCAGACCCTTCAAGTACGAATTCTCCACGAAACCACGACT 125816 Query 302727 CTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTA 302783 ||||| | |||||| ||| |||| || || || | | | | | ||||| Sbjct 125815 TTCGGGGCCCAGATCGTC---TTTGCCGTAGTGCGGGAGTGTACGATGGTTAAAACCGTA 125759 Query 302784 TGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| || || || || |||||||| |||| || | ||| |||||||| || || Sbjct 125758 CGGGATACGTTTACCTTCGACATTCTGCTGACCCACACAAGCAATAATCTGCGAGATGTT 125699 Query 302844 --TAAATCACTGCCCTTGGAGCCAG 302866 |||| | |||||||| |||| Sbjct 125698 AATAAAGGA--ACCCTTGGAACCAG 125676 >seq863 Length=50883 Score = 111 bits (122), Expect = 5e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 |||||||| |||| |||||| ||||||||||| || | |||||||||||| |||||||| Sbjct 38958 CCGTGTGAGATCAGACAATCGCGCTCCATTTCTCCCATACGAAGACCACCCTCGCGAGCA 39017 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| || || || | Sbjct 39018 CGACCCTCCATGGGCTGGCGCGTCAGCATCGTCACGGGACCACGCGACCGAGAGTGAATC 39077 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAA 251667 || || | ||||||||||| | ||||||||||||| || ||||||||||| | | Sbjct 39078 TTGTCGTCGACCATATGCTTCAAGCGCTGGTAGAATGTCGGGCCGATGAAGATCTGTGCA 39137 Query 251668 GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCC 251711 | || | ||||| || | ||||||| |||||||| || Sbjct 39138 GTCAGCCGGCGGCCAGTATGACCACTATACATGACTTCGTTGCC 39181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471764232813710