Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2145 194 3e-43 seq2830 152 8e-31 seq1865 143 4e-28 seq769 91.5 2e-12 >seq2145 Length=220927 Score = 194 bits (214), Expect = 3e-43 Identities = 242/328 (74%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||||| ||||||||||| ||| |||||| |||||||||||||||| || Sbjct 134398 ACGCCTGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGA 134457 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC---CCG 794009 ||||||| |||||||| |||||||| | | | || || ||| | || || Sbjct 134458 GAGATCATGTCCATCCAGTCAAACGGGTT---CTTGACGTTGTAGATCTTGGACACACCA 134514 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| ||||||||||| || ||||| |||||||||||||||||||| || | |||| Sbjct 134515 AGCGAATACAGCAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTC 134574 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||| ||| |||| || ||||| ||||| || ||||| | ||||||| || || Sbjct 134575 ATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCG 134634 Query 794130 TCGATGATGATCTGCCTGGGCACG-TCGGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188 || ||| |||| | || |||| | || | ||||| || ||| ||| ||| | Sbjct 134635 TCACGGATAATCT-CGTGCACACGCTGCTCCGGCAGCTTGGTCACCAGCTTCGAGTACAA 134693 Query 794189 CAGGCAGGCAAAGTCGCAATGCAGACCT 794216 ||| || |||||||| |||| |||| Sbjct 134694 CAGACAAGCAAAGTCTGTGTGCATACCT 134721 Score = 183 bits (202), Expect = 5e-40 Identities = 241/331 (73%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || |||||||| | |||||| |||| || || |||||||| || ||||| Sbjct 134718 ACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTT 134777 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| || || ||||||||| ||||| ||||| || || || || Sbjct 134778 CTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCGAA 134837 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT---GTTGATCCACTTCATCGC 794516 | | || ||||| | | | | || |||| || | ||| ||| ||| Sbjct 134838 TGCCAGAAGACGCTCCGGGTATGAGGACA------CTTTCGGGTCGCACCATCTCAGCGC 134891 Query 794517 CCA-CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCT 794575 ||| ||| ||||| || |||| | || | || || || || || | |||||||||| Sbjct 134892 CCAACTC-GCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCT 134950 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 | || || | |||||||| ||| ||||| ||||| |||||||| |||||||||||||| Sbjct 134951 TTTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGT 135010 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || ||||| ||||||||||| || ||||| Sbjct 135011 TCTCAATGGCAATCTGGAAGCCGTAGAAGCA 135041 Score = 141 bits (156), Expect = 1e-27 Identities = 187/256 (73%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || ||||| || || || | ||| ||||| |||||| ||||||||| Sbjct 135046 GCCTCAGGCACTTGTACTTCATTGCTAAAGTTCATGGCCAAGTTCTCGTTCACGATGCCA 135105 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| || ||||| | |||||||||||| ||||||||||||| ||| |||| Sbjct 135106 TCACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGG 135165 Query 796270 GAGACCCAGTGGACCGT---GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 |||||| || | |||| | | ||| | ||| || || ||||| ||| | Sbjct 135166 TTTCCCCAGT---CCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTG 135222 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGT--TGGTAGCGGATGGGGAACAGAACAA 796384 ||||| ||||| |||||||||| ||| | ||| || | ||||||||||||| || | Sbjct 135223 GCCTCCGCCTTCTTGTACATCTGCCACA--CGTCGTGCTCCTGGATGGGGAACAGCACGA 135280 Query 796385 AGCGATTGGGGTTCTC 796400 |||| || |||||||| Sbjct 135281 AGCGGTTCGGGTTCTC 135296 >seq2830 Length=34304 Score = 152 bits (168), Expect = 8e-31 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || ||||| || ||||||||| |||| || || || ||| Sbjct 6480 TGAACTTGGTCACAGCCTTCGTGCCCTCCGACACGGCGTGCTTGGCAAGCTCACCAGGCA 6539 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||||||| || | ||| |||||| | Sbjct 6540 GCATGAGACGCACAGCCGTCTGGATCTCGCGGCTGGACAGCGTCGACTTCTTGTTGTAAC 6599 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| |||||||||| Sbjct 6600 GCGACAGCTTGCCGGCCTCCGATGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 6659 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| |||||||||||||| |||||||||| Sbjct 6660 TGATCGACATGCCACGCTTGCTGATACCCGTCTCGGGGTGCACCTGACGCAGCACCTTGT 6719 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 6720 AGATGTAGGTGGAGTACGA 6738 >seq1865 Length=140916 Score = 143 bits (158), Expect = 4e-28 Identities = 187/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || || || || ||||||||| ||||||| || || | | Sbjct 41532 TGAACTTGGTCACAGCCTTCGTGCCTTCAGACACGGCGTGCTTGGCCAGCTCACCCGGGA 41591 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || ||||| || ||||||||||| ||| || | ||| |||||| | Sbjct 41592 GCATGAGACGCACAGCAGTCTGGATCTCACGGCTGGACAGCGTCGACTTCTTGTTGTAAC 41651 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| ||| ||||||||| | ||||||| |||| |||||||||| |||||||||| Sbjct 41652 GCGACAGCTTGCCGGCCTCCGACGCGATGCGCTCGAAGATGTCGTTGATGAACGAGTTCA 41711 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| ||| ||| ||| |||||||||||||| |||||||||| Sbjct 41712 TGATCGACATACCGCGCTTGCTGATACCCGTCTCGGGGTGCACCTGGCGCAGCACCTTGT 41771 Query 1485710 AAACAAAGGACGAGTACGA 1485728 | | ||| |||||||| Sbjct 41772 AGATGTAGGTAGAGTACGA 41790 >seq769 Length=43651 Score = 91.5 bits (100), Expect = 2e-12 Identities = 350/538 (65%), Gaps = 20/538 (4%) Strand=Plus/Plus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| ||||| ||||||||||||| || || || ||||| ||||||||||| || Sbjct 39732 GTCCACGGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCCCGT 39791 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATT---CGG 2069369 |||||| || ||||||||| ||||||||| || | || | || ||| Sbjct 39792 CTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATGTAAG---CTTGCTTTTTGTCGG 39848 Query 2069370 GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 |||| || | ||| |||||||| ||||| || |||| | || || || | Sbjct 39849 TTCGGCGATGTGAATGTTCAGCGACTGACTCTGACAGATGTAGGCACCACGATCCGCAGA 39908 Query 2069430 CATGTCGATGGTC-ACG-CGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 || ||| | || || | | | || ||||||||| |||||| || |||||| Sbjct 39909 CAGGTCCAGAATCGACTTCTGCTTGAT--CTCCCACACCGTCTTGTACTTCTCCTTGACG 39966 Query 2069488 TGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCC-CTGCGCTGCGATGAGGCG 2069546 || ||| | | | ||| | | |||||||| || | | | | | || | Sbjct 39967 TGGTTCGGAA-----TGGAGCTCACATTC-TGCACCGAACCGCCGTCATTCAA-GATCTG 40019 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGC-TCGACCAGGTGGCGGT 2069605 || || | || || | ||||| || || | |||| || | | | ||||| || Sbjct 40020 GTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCA-GCTCATTCATCAGGTACTTGT 40078 Query 2069606 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCT 2069665 | || | |||||| || |||| ||||||||||| |||| |||||| |||| | Sbjct 40079 TCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTGGAGGTGAACGGTT 40138 Query 2069666 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 2069725 || | |||| | || || |||||||| | ||| | ||||| ||||| |||| || | Sbjct 40139 CGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGCATCGGCGCGACCA 40198 Query 2069726 GCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 | ||||| ||||||||||||| || |||| | || || || |||||||||| Sbjct 40199 GGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCAGCCCAGTCCCA 40256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915945359992370