Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1775 109 4e-18 seq71 96.9 3e-14 >seq1775 Length=13760 Score = 109 bits (120), Expect = 4e-18 Identities = 435/675 (64%), Gaps = 20/675 (3%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 ||||||||||| || || ||||| || |||| | |||| |||| || || | ||| Sbjct 8193 ACAAGACGATTGTCGAAGTCTTCGCCGCCCAGATGCGTATCACCTGCAGTGGCCTTCACT 8134 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | ||| | ||| || |||| | || |||| || ||| ||| || || |||| || Sbjct 8133 TCGAAGATTCCTTCCTCAATACTCAGCAGAGAGACGTCAAAGGTGCCGCCGCCCAGGTCG 8074 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 ||||| || |||| | | | | | || || || ||||| || || | |||||| Sbjct 8073 AAAATGAGCACAT---TGTGCTCCCCACGCTTCTTGTCCAGACCGTATGCGATGGCAGCA 8017 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || ||||| ||||| ||||| | || || || | ||||| || || ||||| || Sbjct 8016 GCCGTTGGCTCATTGATAATGCGCAGCACGTTCAATCCAGCGATGGCACCGGCATCCTTC 7957 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || || || | || || ||||| ||||| || || || || | ||| |||| | ||| Sbjct 7956 GTCGCCTGGCGCTGCGAGTCGTTGAAATACGCCGGGACGGTCACAACCGCATTCTTCACT 7897 Query 282482 TCTTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539 | || || || | ||||| || | ||| || | | | ||| || |||| Sbjct 7896 TGCTTGCC--GATGAACGCTTCGGCCACCTCACGCATCTTGATCAGCACCATGGACGAAA 7839 Query 282540 TTTGTTCTGG--AGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTT 282596 | | || || ||| | ||| || || |||| || || | | | || | Sbjct 7838 TCTCCTCCGGTTGGAACGT--CTTTGACTCGCCCTTGAACTG-CACCACCACCTGAGGCT 7782 Query 282597 TATTACC---AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTT- 282652 |||| | | || | || || || ||||||| ||| ||||| || || ||||| Sbjct 7781 TATTGTCCGGACCACGCACCACCTTGAACGGCCAATGTTTGATATCCGACTG--CACTTC 7724 Query 282653 -TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATT 282711 ||| || | | || || | || || |||||||| | || ||| || || Sbjct 7723 CGAGTCCGAGAACTTGCGTCCGATCAGACGCTTCGCATCAAACACCGTGTTGTGTGCGTT 7664 Query 282712 AACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAAC 282771 | || |||| | ||||| |||||||| |||||| | || || || || || | || Sbjct 7663 CATGGCGACTTGGTTCTTGGCAGCATCTCCGATCAGACGCTCCGTGTCCGTGAACGCCAC 7604 Query 282772 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 282831 ||||| ||||| |||||||| || || ||||| ||||| || || || | || || Sbjct 7603 GTATGACGGAGTCGTGCGATTGCCCTGGTCATTGGCAATGATCTCCACACGGTCGTTCTG 7544 Query 282832 CCATACACCTACACA 282846 ||| ||||| || || Sbjct 7543 CCACACACCCACGCA 7529 >seq71 Length=133946 Score = 96.9 bits (106), Expect = 3e-14 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 432282 TTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCT 432341 ||| | |||||||| ||||||||| | || || | ||||| |||||||||||| | || Sbjct 124376 TTGCGCGGTAAAGAGGGTCGTATTCGTGGTAACCTAATGGGCAAGCGTGTCGATTTTTCG 124435 Query 432342 GCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCC 432397 || ||||| || || || |||| ||||| |||||| | || ||||||||||||| Sbjct 124436 GCGCGTACTGTCATCACCGCTGACCCTAACATTGCTATTGATCAAGTTGGTGTTCC 124491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740491458959580