Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq769 289 3e-73 seq2557 154 1e-32 seq1410 129 6e-25 seq2145 122 8e-23 >seq769 Length=43651 Score = 289 bits (320), Expect = 3e-73 Identities = 1193/1849 (65%), Gaps = 62/1849 (3%) Strand=Plus/Plus Query 147953 GCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGA 148012 ||||| |||||||||||||||||||| ||| | ||| ||||| ||||| ||| | Sbjct 39771 GCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATCGATG- 39829 Query 148013 CATGAGCGTG---TACGTCGGGTGCGGC-ACAAACAGATTAAACGACTGGCTCTGGTCAA 148068 | ||| || | ||||| | |||| | | || | |||||| ||||| | Sbjct 39830 --TAAGCTTGCTTTTTGTCGGTT-CGGCGATGTGAATGTTCAGCGACTGACTCTGACAGA 39886 Query 148069 TGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT-CTTCATCTCCCAGGCC 148127 || | || ||||| || || | || || | || ||| || | ||| |||||||| || Sbjct 39887 TGTAGGCACCACGATCCGCAGACAGGTCCA-GAATCGACTTCTGCTTGATCTCCCACACC 39945 Query 148128 GTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGG 148187 ||||||||| | ||||| || | |||||| | | ||||||||| |||| | Sbjct 39946 GTCTTGTACTTCTCCTTGACGTGGTTCGGAATGGAGCTCACATTCTGCACCGAACCGCCG 40005 Query 148188 TGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCG 148247 | || ||||| || |||| || | | | ||||| ||||| |||| Sbjct 40006 TCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAGCTCATTC 40065 Query 148248 ATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTG 148307 ||||| |||| ||||| | |||||| || || |||||||| || |||| |||| Sbjct 40066 ATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTACATGTTG 40125 Query 148308 CTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGC 148367 || |||||||| | |||||||| || || | ||||| || || | ||||| ||| Sbjct 40126 GAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGCCGTCGGC 40185 Query 148368 ATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCC 148427 || ||| ||||| ||||| ||||||| ||| || | || ||| || || Sbjct 40186 ATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTCCTTAAGCGCA 40245 Query 148428 GCCCAGTCCCAGAG--CGGCG-ACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 ||||||||||| || ||| | | || || |||| |||||| ||| |||| | || || Sbjct 40246 GCCCAGTCCCACAGACCGGAGGAAGGCGTGACGTCCCACATATCGAACTGGAAGATACCC 40305 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 ||| || || |||| | | | |||||| || ||| |||||||| || Sbjct 40306 TTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCGTGGCCAGTTC-CAT 40364 Query 148545 CT-CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA---GCGC 148600 | || ||| | | ||||||| || |||||| || | | |||||||| |||| Sbjct 40365 CGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGC 40424 Query 148601 CGCCG-ACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTA 148659 | ||| |||| ||| ||| | || | | || ||||| ||||||||||| | Sbjct 40425 CTCCGGACTC----TCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCA 40480 Query 148660 CGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAG 148718 | || | |||| || ||||| |||||||| ||| || ||| | | || ||| Sbjct 40481 CACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC-CTCAATAACGGGGTAG 40539 Query 148719 TGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTT-----TGTAATTCTGC 148773 | |||| |||||||| ||||| || ||||| | |||||| | || | || Sbjct 40540 TAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGACCTCATACAGC 40599 Query 148774 --GCAGCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGC 148831 | | || || | || || ||| |||| | | || | || | || || Sbjct 40600 TTCTTGTAGTTGAACA-CGGCGTTCTCA---ACGA-ACTTGGG--GAGCGCCACGGACGC 40652 Query 148832 TAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT 148891 | |||||||||||| ||||| || | ||||||| | | || ||||| || Sbjct 40653 CAAGTTGCACACGGCCACTTCATCGGGCGACGTGTACTCCATCACTTCACAGCACAAGTT 40712 Query 148892 GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTA 148951 ||| | ||| ||| | ||||| || ||| ||||| |||| ||||||||||| Sbjct 40713 GCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTA 40772 Query 148952 CAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTC 149008 ||||||| | || |||| || || | ||||| |||| || ||||| ||| | Sbjct 40773 CAGCATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACC---ACAGCTG 40829 Query 149009 CTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTC 149068 || || | | || | ||| || || ||||||| | ||||| ||| Sbjct 40830 TTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTC 40889 Query 149069 GAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCA 149128 |||| |||| || |||| |||| |||||||| || || || || | | ||| Sbjct 40890 GAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCA 40949 Query 149129 CACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAG 149188 | ||| | || | ||| |||||||| |||||||| |||||||| || || || | | Sbjct 40950 CTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAA 41009 Query 149189 GT--CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGAGCACGCTGAA 149245 || || || | ||||| ||| || ||| ||||| | || || | || Sbjct 41010 GTCACGTGCACGGTGCAG--CTCGTTACCATGGTTCTTGCGCAAATCCAAGAACTC-AAA 41066 Query 149246 TATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT---GCCGCC 149302 | || ||||||||||| || | || | ||| | | |||||||| || || || Sbjct 41067 CACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACC 41126 Query 149303 CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGC 149362 |||||| |||| || || | | |||||||||||| | ||| || ||||| ||| Sbjct 41127 CTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGA 41186 Query 149363 AGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCC 149422 | |||||| || || ||| ||| ||||| | ||||||| ||| ||| Sbjct 41187 CGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCC 41246 Query 149423 GATGCCGCCGCCGTACTTTGAGATGGCCGCGCA--GTCGCCGAGCGTCGAGTAGATGCCC 149480 ||||| || | |||| |||||| ||| || || | ||| ||| || ||||| Sbjct 41247 AATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTC--ATAAATGCCT 41304 Query 149481 TCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTG 149540 || || ||| || ||||| || || |||||||| ||| ||| ||| | || Sbjct 41305 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTA 41364 Query 149541 CCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTAC 149600 || || ||||| |||||| ||||||| || || |||| || ||| | ||||| Sbjct 41365 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 41424 Query 149601 GACTCGAGCACGCGGTCCATGTCATCGCC--ATGGATGCCTATGGCGACGCGCATCAGCA 149658 | ||| || | | |||| ||| | |||||||||| || |||||||| | || Sbjct 41425 GTCTCAAGTGCCGCCTTGATGT--TCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCA 41482 Query 149659 TATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTG 149718 | ||||| || || ||| |||||||| | || | ||||| | || |||| Sbjct 41483 TCTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTG 41542 Query 149719 TCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 |||| ||||||| || | ||| |||||||| ||| | ||| |||||| Sbjct 41543 TCTTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGC 41591 >seq2557 Length=41672 Score = 154 bits (170), Expect = 1e-32 Identities = 161/208 (77%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 9819 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 9877 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||||||||||||||| ||| || ||||| Sbjct 9878 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTT 9937 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||||| ||||||||||||| |||| || ||||| ||||| || Sbjct 9938 CACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGT 9997 Query 133643 TTTTACGAAAATCTGCA---TGGCTTAT 133667 || || || ||||||| |||||||| Sbjct 9998 CTTCACAAAGATCTGCATCTTGGCTTAT 10025 Score = 154 bits (170), Expect = 1e-32 Identities = 155/199 (78%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 14300 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 14242 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||||||||||||||| ||| || ||||| Sbjct 14241 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTT 14182 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||||| ||||||||||||| |||| || ||||| ||||| || Sbjct 14181 CACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGT 14122 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 14121 CTTCACAAAGATCTGCATG 14103 Score = 147 bits (162), Expect = 2e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| ||| |||||| ||||||||||| Sbjct 14072 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC-GTCCTCCAGCTGCTTGCC 14014 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||||||||||||||| ||| || ||||| Sbjct 14013 GGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTT 13954 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | | ||||| ||||||||||||| |||| || ||||| ||||| || Sbjct 13953 CACATTGTCGATTGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGT 13894 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 13893 CTTCACAAAGATCTGCAT 13876 >seq1410 Length=10983 Score = 129 bits (142), Expect = 6e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAATG 133532 ||||| || ||||| || || |||| |||||||||||||||||| ||| | || Sbjct 2457 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2516 Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 || ||||||||||| || || || || |||||||| ||| || ||||||| | ||| Sbjct 2517 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2576 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 | |||| | ||||||||||||| |||| ||| ||||| ||||| || || || || Sbjct 2577 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2636 Query 133653 ATCTGCATG 133661 ||||||||| Sbjct 2637 ATCTGCATG 2645 >seq2145 Length=220927 Score = 122 bits (134), Expect = 8e-23 Identities = 287/424 (68%), Gaps = 11/424 (3%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| || || ||||| || ||||| || ||||||| | || || ||| ||| Sbjct 134412 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCAT 134471 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTG--TACGAGCAGT 120471 | || |||||||| | |||| || || | || |||| | ||| ||||| Sbjct 134472 CCAGTCAAACGGGTTCTTGACGTTGTAG-ATCTTGGACACACCAAGCGAATAC-AGCAGG 134529 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCC 120531 ||||| || || ||||||||||||| ||||||| | || ||||||||| | || | || Sbjct 134530 CGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCC 134589 Query 120532 ACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 || || | || | || | | ||||| | || || | ||| || || || || | Sbjct 134590 ACTGGGAGCG-AGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTC 134648 Query 120591 GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAA 120649 | ||| | || | |||| |||| || || |||| ||| |||| || |||| Sbjct 134649 GTGCACACGCTGCTCCGGCAGCTTG-GTCACCAGC---TTCGAGTACAACAGACAAGCAA 134704 Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709 |||| ||||||| || || || || || ||||||||| || |||| || |||| Sbjct 134705 AGTCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCA 134764 Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769 ||| || | |||||| |||| |||| | |||| |||||| ||||| | |||| Sbjct 134765 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCT 134824 Query 120770 CCAC 120773 |||| Sbjct 134825 CCAC 134828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483403698989200