Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2557 105 2e-17 >seq2557 Length=41672 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || ||||| ||| ||| Sbjct 13879 CAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCCGAC 13938 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| || || ||||| || ||||| || ||| ||| || Sbjct 13939 TCAATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 13998 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 13999 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 14058 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| |||||||| || Sbjct 14059 CAGAAGGAGTCTACACTTCACCTGGT 14084 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || ||||| ||| ||| Sbjct 10012 CAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCCGAC 9953 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || || ||||| || ||||| || ||| ||| || Sbjct 9952 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 9893 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 9892 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 9833 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| |||||||| || Sbjct 9832 CAGAAGGAGTCTACACTTCACCTGGT 9807 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || ||||| ||| ||| Sbjct 14107 CAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCCGAC 14166 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || || ||||| || ||||| || ||| ||| || Sbjct 14167 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 14226 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 14227 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 14286 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| |||||||| || Sbjct 14287 CAGAAGGAGTCTACACTTCACCTGGT 14312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181777947916430