Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2145 298 8e-75 seq2830 132 7e-25 seq1865 120 4e-21 seq2016 116 5e-20 seq1513 100 4e-15 >seq2145 Length=220927 Score = 298 bits (330), Expect = 8e-75 Identities = 424/587 (72%), Gaps = 16/587 (3%) Strand=Plus/Minus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTAC 1455790 || |||||||||||||| || ||||||||||||| | || | ||| | |||||| Sbjct 135296 GAGAACCCGAACCGCTTCGTGCTGTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTAC 135237 Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC---AC 1455847 || ||||| |||||| ||| ||||| || || ||| | ||| | | |||| | Sbjct 135236 -AAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAA 135178 Query 1455848 GGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 || |||||| || | ||| ||||||| || ||||||||||||||| | ||||| Sbjct 135177 GG---ACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTT 135121 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 ||| |||||||| |||||||||||| ||||||| ||||| ||||| || || | Sbjct 135120 CTTT-GCCGCCAGTGATGGCATCGTGAACGAGAACTTGGCCATGAACTTTAGCAATGAAG 135062 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | ||| |||| ||||| |||| || ||||| |||||||| ||||| || |||||||||| Sbjct 135061 TACAAGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACT 135002 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACC 1456087 | || |||||||| || || ||||| ||| |||||||| | || || |||||||||| Sbjct 135001 CAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAAAAGGACCACC 134942 Query 1456088 TCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGT 1456147 | | || || || || || | |||| |||| || ||||| |||||| ||| | Sbjct 134941 TGCTGCGTGCAATTGAGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTGAGAT 134882 Query 1456148 GGATCAACAAGGA--GGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTC 1456204 || | || | | | |||| | || | ||||| || | | || || || || Sbjct 134881 GGTGCGACCCGAAAGTGTCCTC-ATAC---CCGGAGCGTCTTCTGGCATTCGCAGCTGTG 134826 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 ||||| ||||| ||||||||| || ||| ||||||| |||||||||||||| || ||| Sbjct 134825 GAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC 134766 Query 1456265 ATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||||| |||| | |||| |||||| | |||||||| || |||| Sbjct 134765 ATGCCTGGTC-TGAGCTTCTCCAACGAGCTCATCAGTCGTGATGAAG 134720 Score = 181 bits (200), Expect = 2e-39 Identities = 244/330 (74%), Gaps = 10/330 (3%) Strand=Plus/Minus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-A 1456505 |||| ||||| |||||||| |||||| | ||| ||| ||| || | ||||| | || | Sbjct 134721 AGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACCAAGCTGCCGGA 134662 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | |||| || | |||| ||| || || || ||||||| | ||||| || |||| Sbjct 134661 GCAGCGTGTGCACG-AGATTATCCGTGACGCTGTGAAGATCGAACACGAGTTCGTGAGCG 134603 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | ||||| || |||| ||| |||||||||||| | | ||||||||||||||||||||| Sbjct 134602 ACTCGCTCCCAGTGGAGCTGATCGGCATGAACTCGGC-GCTCATGTGCCAGTACATTGAG 134544 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA 1456685 || || || ||||||||||| |||| || || | ||| |||| ||| | | Sbjct 134543 TTC-GTGGCAGACCGCCTGCTGTATTCGCTTGG-TGTGTCCAAGATCTACA--ACGTCAA 134488 Query 1456686 --ACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 ||||||| |||||||| ||||||| || |||||||||||||||| |||||| Sbjct 134487 GAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACCAACTTCTTCGAGAA 134428 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || || ||||||||| ||||||| ||||| Sbjct 134427 GCGTGTGGGCGAGTACTCCAAGGCAGGCGT 134398 >seq2830 Length=34304 Score = 132 bits (146), Expect = 7e-25 Identities = 177/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||||| |||||||||||| || | | | Sbjct 6738 TCGTACTCCACCTACATCTACAAGGTGCTGCGTCAGGTGCACCCCGAGACGGGT-----A 6684 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | |||||||||||||||||||| |||||||||| |||| |||||| Sbjct 6683 TCAGCAAGCGTGGC-ATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATC 6625 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||||| ||| |||| | ||||||| ||| | || |||||| Sbjct 6624 GCATCGGAGGCCGGCAAGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGCGAG 6565 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || ||||| || || ||| || || || |||| ||||||||| || ||| Sbjct 6564 ATCCAGACGGCTGTGCGTCTCATGCTGCCTGGTGAGCTTGCCAAGCACGCCGTGTCGGAG 6505 Query 725136 GGCAC 725140 ||||| Sbjct 6504 GGCAC 6500 >seq1865 Length=140916 Score = 120 bits (132), Expect = 4e-21 Identities = 176/248 (71%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||||| |||||||||||| || | | | Sbjct 41790 TCGTACTCTACCTACATCTACAAGGTGCTGCGCCAGGTGCACCCCGAGACGGGT-----A 41736 Query 724956 TCCTCCAACAAGTCC---ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGC 725012 || | |||| | |||||||||||||||||||| |||||||||| |||| ||| Sbjct 41735 TC----AGCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGC 41680 Query 725013 ATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC 725072 |||| | |||||||| ||| |||| | ||||||| ||| | || || Sbjct 41679 ATCGCGTCGGAGGCCGGCAAGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGT 41620 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||||||||||| || ||||| || || | | || || ||||||| ||||||||| || Sbjct 41619 GAGATCCAGACTGCTGTGCGTCTCATGCTCCCGGGTGAGCTGGCCAAGCACGCCGTGTCT 41560 Query 725133 GAGGGCAC 725140 || ||||| Sbjct 41559 GAAGGCAC 41552 >seq2016 Length=14269 Score = 116 bits (128), Expect = 5e-20 Identities = 197/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 1152833 CCGTCGTAGGGCTGCTTGCGCGCGATGATCTCCCACATGACGACGCCAAACGAGTAGACA 1152892 |||||||| || || || || || ||||||||| ||||||| ||| |||||| | ||| Sbjct 6972 CCGTCGTACGGACACTCGCCCGTGACGATCTCCCAGATGACGATGCCGAACGAGAACACA 7031 Query 1152893 TCGGCCTTTTCCGAATACTTTTCGCCGCGCAAGATCTCGGGCGCCGTCCACGCCGGCGTG 1152952 |||||||| |||| ||||| | | || || | || |||||| ||||| | || Sbjct 7032 TCGGCCTTCTCCGTGTACTTCTGGTTGCCCAGCACTTCCGGCGCCATCCACTGCACAGTC 7091 Query 1152953 CCGCA---GCGGGTCATCGT---CGCATTGTCCTGGCGGATGCGGGCAAAGCCAAAGTCG 1153006 ||||| || ||||| || | ||| ||| || || |||| ||||||||| Sbjct 7092 CCGCAATTGCCTGTCATGGTCTGCACATGAGCCT---TGACCCGAGCAAGGCCAAAGTCT 7148 Query 1153007 GCCACCTTGACGGTGAAATTGTCGTCGACGAGCAGGTTGGACGACTTTTGGAGGTCGCGG 1153066 | | |||| | |||| || | ||| || |||| ||||| |||| || |||||| ||| Sbjct 7149 GAAAGTTTGATGTTGAAGTTCTTGTCCACCAGCAAGTTGG--GACTCTT-GAGGTCTCGG 7205 Query 1153067 TGCACGATCGGCCGTTCGCGCCCGTGCAGATAGGCCACGCC 1153107 |||| ||||| ||||| ||||||||| | || ||| Sbjct 7206 TGCAGAATCGGTCGTTCAAAGTGGTGCAGATACGACATGCC 7246 >seq1513 Length=55807 Score = 100 bits (110), Expect = 4e-15 Identities = 187/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 ||||| || |||||||| || ||||| | || || || | | | | || |||| ||| Sbjct 38748 AAGCGTAGAATGGCACAGCGACTCTGGATGGGTTCAATAATCTTGGTAGAATTGTTACAG 38807 Query 332933 GCCAGGGCAAACCGCGTCGTAT-TGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||||| || ||||| || || || | | | | |||| || || || ||||| || Sbjct 38808 GCCAGAGCGAACCGTGTGGTGGCTGAGAAGATCT-CCATAGTGCGGCGTAGAGCCTGCTG 38866 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 || || | ||| | |||| |||||||| ||||||| ||| |||||||| || |||| Sbjct 38867 CGCTGCTGCCGTCATCGAGTCCGCCTCGTCCAGGATGACGATTTTGTGGCGTCCAGGCGG 38926 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| | | |||| ||||| | |||| || ||| | ||| || Sbjct 38927 CAGCGTCACCTTCTGTTGGGCGAACATCTTGATCTTGCTGCGTACAGTGTCGATGCCTCG 38986 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCT 333143 ||||||||||||||||| || ||||| |||| Sbjct 38987 GTCGTCCGACGCGTTGAGCTCCAGCACCGCCT 39018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177538241298460