Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2557 122 8e-23 seq1410 113 4e-20 seq442 82.4 7e-11 >seq2557 Length=41672 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 35502 CTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 ||| |||||| ||||| | | | ||||| || | ||| |||||| || ||||||| Sbjct 9781 CTTAATTTCCGCCACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGT 9840 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | ||| || || || |||| ||||||||||| || || || |||| |||||||||| Sbjct 9841 AGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGT 9900 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | || | || |||||||| ||| || ||||||| | | | | || |||| | Sbjct 9901 CAGGCGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAG 9960 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || | |||||| || || || |||| || |||||||| |||||||| Sbjct 9961 GCTCCACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 10015 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| |||||| || |||||||| ||| | Sbjct 14102 CCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 14043 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || |||| ||||||||||| | || Sbjct 14042 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 13983 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||| ||| || ||||||| | | | | | |||| | ||||| Sbjct 13982 ATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATTGAGTCGGAAGGCTCCACG 13923 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| || || || |||| || |||||||| |||||||| Sbjct 13922 TCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 13876 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| ||| || || || |||| || Sbjct 14313 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 14254 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| ||||||||||| | || | || |||||||| Sbjct 14253 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 14194 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||| || ||||||| | | | | || |||| | ||||| || | |||||| || || Sbjct 14193 GATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 14134 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || |||||||| |||||||| Sbjct 14133 GCCAGTCAGTGTCTTCACAAAGATCTGCAT 14104 >seq1410 Length=10983 Score = 113 bits (124), Expect = 4e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| || | || || || |||| || |||||||| || || || | Sbjct 2455 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2514 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | |||| | |||||||||| ||| || ||||| | | ||| Sbjct 2515 TCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACA-TTG 2573 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | |||| || ||||| || | |||||| || || ||||||| || |||||| Sbjct 2574 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 2633 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 2634 AAGATCTGCAT 2644 >seq442 Length=77766 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||||| || |||||||| || | | Sbjct 69838 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 69779 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 | || || |||| ||||||||||| || || || |||| ||||||||||| Sbjct 69778 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 69726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450777653176400