Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2551 129 5e-25 seq2145 89.7 4e-13 >seq2551 Length=89002 Score = 129 bits (142), Expect = 5e-25 Identities = 313/465 (67%), Gaps = 12/465 (3%) Strand=Plus/Minus Query 40857 AGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAA 40916 ||||| | ||| ||||| || || || |||||||| |||| ||| || |||||||| || Sbjct 1204 AGGGAAGTAGGAGATCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAG 1145 Query 40917 TATGACAC---TATGTACTCTGATTATACCAATAAAGGAATGGATCAA-TTACAGTGCGT 40972 || ||| |||| | | || || || | ||| |||||||| || | | | || Sbjct 1144 TA---CACGGATATGCATGCAGACTACACTGGACAGGGAGTGGATCAACTTGCTGAG-GT 1089 Query 40973 TATAGATACGATTAAATCCGATCCCGATAG-CCGACGTATAATATTGTGCGCGTGGAACC 41031 || | | | | ||| | ||| | ||| || || | ||| |||||||| | Sbjct 1088 GATCCACAA-ACTGCGCACGAACTCGACCGACCGTCGGATTGTGCTGTCTGCGTGGAATC 1030 Query 41032 CAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTT 41091 | |||| | || |||||| |||| || || || |||| |||||||||||||| Sbjct 1029 CGGCGGATCTCAATGAGATGGCGCTGCCGCCGTGCCACATGTTTTGTCAGTTTTACGTGG 970 Query 41092 GCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCC 41151 |||| || |||| || || |||| || | || | ||||||||| || || || | Sbjct 969 CGGATGGCGAGTTGTCGTGCCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGC 910 Query 41152 CGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAA 41211 |||| ||||| || |||||||| || || ||| | | || || || | ||| | Sbjct 909 CGTTCAACATCGCCAGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGCTGGTTTGA 850 Query 41212 AACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGC 41271 ||||||| |||||| | |||| | || |||| ||| | ||| | || ||| |||||| Sbjct 849 AACCTGGCGAATTTATCCACATTATTGGCGATGCACACGTATACCTGAACCACGTAGAGC 790 Query 41272 CGTTAACAGAA-CAACTGACACGAAAACCTAGACCATTTCCAACG 41315 || | ||||| || || |||| | || ||||||| || ||| Sbjct 789 CGCT-TCAGAAGCAGCTAGCACGCACCCCGCGACCATTCCCCACG 746 >seq2145 Length=220927 Score = 89.7 bits (98), Expect = 4e-13 Identities = 290/444 (65%), Gaps = 11/444 (2%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| || ||||| || || || || || || || || || |||| | ||| Sbjct 135131 GTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAGAACTTGGCCATGAACTTT 135072 Query 43910 GCGCAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 |||| ||||| ||| | || || || || || || || || || || |||||||| || Sbjct 135071 A-GCAATGAAGTACAAGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATTGCCATTGA 135013 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 || || || || || ||||| || || || || ||||||||||| || | || Sbjct 135012 GAACATCCACTCAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGA 134953 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACT- 44087 ||| | | || | ||| || || || | || | | | | || ||| || | Sbjct 134952 AAAGGACCACCTGCTGCGTGCAATTGAGACCATCCC-GTGTGTGACCAAGAAGGCGAGTT 134894 Query 44088 GGGCCCTTAAATGGATAAATTCAAATGATTCTTTT-----GGAGAACGACTTGTCGCGTT 44142 |||| || | |||| | | || | || | |||| || ||| | || || Sbjct 134893 GGGCGCTGAGATGGTGCGACCCGAAAGTGTCCTCATACCCGGAG--CGTCTTCTGGCATT 134836 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 |||| |||||| || || ||||| || || || ||| |||| || ||| | ||||| Sbjct 134835 CGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAA 134776 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 || ||| | |||||||| ||| || || || ||| | || |||||||||||||| | Sbjct 134775 GCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATCAGTCGTGATGAAGGTAT 134716 Query 44263 ACATTGCGATTTTGCTTGCTTGTT 44286 || || |||||||| |||| Sbjct 134715 GCACACAGACTTTGCTTGTCTGTT 134692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442291494150