Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq769 165 1e-35 seq2145 120 4e-22 seq1254 87.8 2e-12 >seq769 Length=43651 Score = 165 bits (182), Expect = 1e-35 Identities = 559/860 (65%), Gaps = 13/860 (2%) Strand=Plus/Plus Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 |||||| || | |||| ||||| ||| |||| || |||||||| |||||| | Sbjct 40722 AATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAA 40781 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGT 111433 ||| |||||||| |||| | | |||||||| ||| | | || || | Sbjct 40782 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGAT 40841 Query 111434 ACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 | ||| ||| || || || ||||||||| | || | || |||||||| Sbjct 40842 TGTCTTGCG--GGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCT 40899 Query 111494 CCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| | || ||| | ||||| || |||| || |||||||| | | ||| | ||| Sbjct 40900 CCC-CAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATT 40958 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TAC 111611 |||| || ||||||||||| || || || | |||||| | | || | || | | | Sbjct 40959 GGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGC 41018 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || | || || ||| ||| ||||| || || || | |||||| | | ||| |||| Sbjct 41019 ACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAAACACATCAGCGT 41077 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 111728 |||| || || ||||| | || | |||||||| || || ||| | || | || | Sbjct 41078 GCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGT 41137 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 | || || || ||||||| || || ||||| || || || || | || || || | Sbjct 41138 ATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCG 41197 Query 111789 TCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCA 111847 | || || || || | ||| | |||| | | || || || ||||| || || Sbjct 41198 TGCCGCGGATGT-AGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCC 41256 Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907 |||||||| ||||| |||||||| | ||||| |||| || || | || ||||| Sbjct 41257 GCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCA 41316 Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAG 111967 |||| |||| | | |||||| |||| || || | ||| |||||||||||||| Sbjct 41317 TCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGTACCAGCATTGAAC 41376 Query 111968 AGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACA 112027 || || || || ||||| |||| | ||| ||||| ||||| ||||| | | Sbjct 41377 AGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCC 41436 Query 112028 GAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTT 112087 | | |||| | ||||||||| | || || ||||||| ||| | ||| || | Sbjct 41437 GCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGT 41496 Query 112088 TCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAG 112147 |||| | |||| | || || ||||||| | |||| || || || | ||||| Sbjct 41497 TCCACCACTTTGCCGTGGACACGGAAGAGATAGCCCCTCTCCAGTGTCTTAAAGCCAAAA 41556 Query 112148 TAACCAAAATCATAGTCCCG 112167 ||| | | ||| |||| || Sbjct 41557 TAATCGTATTCAAAGTCTCG 41576 >seq2145 Length=220927 Score = 120 bits (132), Expect = 4e-22 Identities = 330/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 134413 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCATC 134472 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 ||||||| || ||||| |||| | || | ||| |||| | || || || Sbjct 134473 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 134532 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | | Sbjct 134533 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 134592 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 ||||| | ||| | |||| | | || |||| || || || | || |||| Sbjct 134593 GGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 134652 Query 122611 ATA----GTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 | | | | ||| || | |||| || || || | | | | ||||| | Sbjct 134653 ACACGCTGCTCCGGCAGCTTGGTC----AC-CAGCTTCGAGTACAACAGACAAGCAAAGT 134707 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | ||| ||||| || || || || || ||||||| ||||| ||||||| Sbjct 134708 CTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGA 134767 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 |||| |||||||| | ||| | || | ||| || || || ||||||||||| ||||||| Sbjct 134768 GACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 134827 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTT-GCATCAAACCATTTC 122844 || || || || | ||| || || | | | ||| || ||||| | || ||||| || Sbjct 134828 CAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCTC 134886 Query 122845 ATTGCCCATTTCGCCTTCTT 122864 | ||||| |||||||||| Sbjct 134887 AGCGCCCAACTCGCCTTCTT 134906 >seq1254 Length=1359 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 440 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 381 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 380 CCGGTAGGAGCTT 368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 1265 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 1206 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 1205 CCGGTAGGAGCTT 1193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628009783368000