Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2145 159 4e-34 seq769 154 2e-32 >seq2145 Length=220927 Score = 159 bits (176), Expect = 4e-34 Identities = 386/579 (67%), Gaps = 14/579 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 134413 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGTAGAGAGATCATGTCCATC 134472 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||| |||||||| ||| | || | ||| |||| | | || || || Sbjct 134473 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 134532 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | ||| |||||||||||| |||| | | |||||||| ||||| || | | Sbjct 134533 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 134592 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| ||| | |||| | | || || | |||||| || || | || |||| Sbjct 134593 GGGAGCGAGTCGCTCACGAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 134652 Query 129968 ATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG-----CAAAC 130021 | | | ||| | || ||| || ||| |||| | || | |||| Sbjct 134653 A----CACGCTGCTCCGGCAGCTTGGTCACCAGCTTC--GAGTACAACAGACAAGCAAAG 134706 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| | ||| || ||||| |||||| || || ||||||| |||||| |||||| Sbjct 134707 TCTGTGTGCATACCTTCATCACGACTGATGAGCTCGTTGGAGAAGCTCAGACCAGGCATG 134766 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 ||||| |||||||| | |||||| || | ||||| ||||| ||||||||||| |||||| Sbjct 134767 AGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCC 134826 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTT-GTATCAAACCACTT 130200 ||| ||||| || | |||||||| | | ||| | ||||| | || |||| | Sbjct 134827 ACAGCTGCGAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCT 134885 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 || |||||| |||||| || | |||||||| ||||| || || | || | Sbjct 134886 CAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTG 134945 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 | |||||| | || ||||||||| | || ||||| Sbjct 134946 GTCCTTTTCCACAGCGTCCTTGATGTACGTGTCAATGAG 134984 >seq769 Length=43651 Score = 154 bits (170), Expect = 2e-32 Identities = 487/750 (65%), Gaps = 11/750 (1%) Strand=Plus/Plus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTT---AATGGTGCCCAAGTTCTTT 118808 |||||||| || | ||| ||||||||| ||| ||| ||||| | ||||| Sbjct 40684 GTGTACTCCATCACTTCACAGCACAAGTTG---CTCGAGCGAATCGTGCCGAGGTTCTGC 40740 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || ||||| ||| || |||||||| |||||| | ||| |||||||| | Sbjct 40741 TGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAAGGCACGCCCGTCTCAATC 40800 Query 118869 TGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCC 118928 || | | |||||||| ||| | | ||| | || | ||| || || Sbjct 40801 TGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGCCT 40860 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || ||||||||| | || | || ||||| || ||| | ||| | || || Sbjct 40861 TCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTATAGACCG 40920 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 || |||| | || ||||| | | ||| | ||| |||| || ||||||||||| Sbjct 40921 GGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAAC 40980 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA-CAGCGAGCTTCTTCATCCCCCTG 119107 || || || | ||| || || |||| | || || || | || || | | || || Sbjct 40981 AGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCT-CGTTACCATG 41039 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 || ||||| ||||| || || | | ||| ||||||||||||||||| || | ||| Sbjct 41040 GTTCTTGCGCAAATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGC 41099 Query 119168 GATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 | ||| ||||| || || ||| |||||| || || | || || ||||||| || Sbjct 41100 AAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTATCGTGCCGTATCGTTAAACAC 41159 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 119284 || ||||| || ||||| || | ||| ||| || || || || || ||| | Sbjct 41160 TCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGT 41219 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 |||| || | ||| || || ||||| || || |||||||| ||||| ||| || Sbjct 41220 AGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCCGCCCACTTGGAGATGCACGCACA 41279 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 || | ||| || | || || || || || |||||| ||| | || | | |||||| Sbjct 41280 CTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCA 41339 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 |||| ||| || | || |||||||| ||||| || || || || |||||| |||| Sbjct 41340 CGAAGACAATTGTGGACGTGGAGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAA 41399 Query 119465 CATACCTTGGGACATCTTGTCGTAGGTCTC 119494 | ||| ||||| ||||| ||||| Sbjct 41400 GAATTTTTGCGACATGAGTTCGTAAGTCTC 41429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618413322854800