Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq769 219 5e-52 seq1591 143 3e-29 seq2750 118 1e-21 seq1234 87.8 2e-12 >seq769 Length=43651 Score = 219 bits (242), Expect = 5e-52 Identities = 532/788 (68%), Gaps = 26/788 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTA-CACGCGTGTCCGTGAGACGTAC 53251 |||||||||| || | || |||||| ||||| | || | | | |||||| ||| Sbjct 41479 TCATGCGCGTGGCTCTAGGCATCCACAA-GACGAACATCAAGGCGGCACTTGAGACTTAC 41421 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| ||||| | ||| || |||||||| || || |||||||| |||||||| Sbjct 41420 GAACTCATGTCGCAAAAATTCTTCACCCACGCCACCCCCACGCTGTTCAATGCTGGTACT 41361 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || || |||| |||||| || |||| ||| |||||||||| || || ||| Sbjct 41360 CCACGTCCACAATTGTCTTCGTGCTTCTTGTTGGCCATGCAGGATGACTCTATTGAAGGC 41301 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || || || || || || ||||||| ||||||||||||| |||| || || || ||| Sbjct 41300 ATTTATGACACTCTGAAACAGTGTGCGTGCATCTCCAAGTGGGCGGGAGGCATTGGCATC 41241 Query 53432 -CACTGCTCGAACGTCCG---TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG- 53486 ||| | ||| |||| | | ||| || || ||| || ||||||||| ||| Sbjct 41240 AGTATGCAC-AACATCCGAGCTACTAACAGC-TAC--ATCCGCGGCACGAACGGC-TCGT 41186 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || | || ||| | || ||||| || || || ||| | ||||| || ||||| |||||| Sbjct 41185 CCAACGGCATCATCCCCATGCTGCGAGTGTTTAACGATACGGCACGATACGTGGACCAGG 41126 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| || || |||||||| || || || || || || || ||||||||||| || | Sbjct 41125 GTGGAGGTAAACGCAAGGGATCATTTGCGATTTATCTGGAACCGTGGCACGCTGATGTGT 41066 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGC--TGC-CGTGACC 53663 | ||||| | || |||| ||| || ||| || ||| ||| | ||| |||||| Sbjct 41065 TTGAGTTCTTGGATTTGCGCAAGAACCATGGTAAC---GAGCTGCACCGTGCACGTGACT 41009 Query 53664 TGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGT 53723 |||| ||||||||| | ||||| || |||||| | |||||| | | ||| Sbjct 41008 TGTTCTATGCTCTGTGGGTGCCGGATCTGTTCATGAAGCGTGTGGAGGCCAATGGCAAGT 40949 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTT 53782 || || | || || |||||| ||||| || | | ||| || || |||||||| Sbjct 40948 GGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTATACGAGTG-CTGGGGAGAGGAGTT- 40891 Query 53783 AACGAGA---TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 ||||| ||| | || ||||| | | |||||| | |||| |||| || Sbjct 40890 --CGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGCCCGCAAGACAATCAATGCT 40833 Query 53840 CGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGC 53899 | || | ||| || || || | ||| | |||||||| ||| | |||| Sbjct 40832 CAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGACGGGCGTGCCTTTCATGCTG 40773 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGC 53959 |||||||| | | |||| ||| ||||||| ||||| ||||| || |||||| Sbjct 40772 TACAAGGACGCCGCCAACCGCAAGTCCAACCAGCAGAACCTCGGCACGATTCGCTCGAGC 40713 Query 53960 AACTTATG 53967 ||||| || Sbjct 40712 AACTTGTG 40705 Score = 168 bits (186), Expect = 7e-37 Identities = 532/812 (66%), Gaps = 33/812 (4%) Strand=Plus/Minus Query 55133 ACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAG 55192 || || ||||||||| |||||||||| || |||||||| | | ||| ||||| Sbjct 40574 ACACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAAT 40515 Query 55193 TCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATG 55252 |||||| | || ||||| || | | || ||||| |||||| | || ||| ||||| Sbjct 40514 TCCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATC 40455 Query 55253 ATGCTCGGATTGCCCTTCGAC--TCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC- 55309 | | | || | ||||| || | | || || || | ||| || | |||||| Sbjct 40454 CTCATGGACTTTGCGTTCGAGAGTCCGGAG--GCGCGTGAGCTCAACAAGAATATCTTCG 40397 Query 55310 AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACC 55369 || | |||||||| || | | ||| |||| | ||||| | | ||| | Sbjct 40396 AGAC-CATCTACTACGCTTCTATGGAGACGTCGATGGAACTGGCCACGGAATTGGGCCCG 40338 Query 55370 TACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGC 55429 |||||||| |||| | |||||| || |||||| | ||||||||||| | |||| | Sbjct 40337 TACGAGACTTTCCAGGGTTCGCCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGGAC 40278 Query 55430 ---AAGTCTGACCCCA---TGTTTGACAAGT------TGAAGCATGACATTCACTTGTGG 55477 | | || | || ||| ||| | | ||| | | | | | Sbjct 40277 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 40218 Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| ||||| || || || || ||||| ||||| || ||||| ||||| |||||| | Sbjct 40217 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 40158 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || || |||||| | |||| |||| ||| ||||||| ||| ||||| || || Sbjct 40157 GGTAATAACGAGTCTATCGAACCGTTCACCTCCAACATGTACAACCGCCGCGTGCTTGCG 40098 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || |||||| ||| | |||||| |||| | || || ||| || | |||| Sbjct 40097 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 40038 Query 55658 AACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG- 55714 || || | | | ||| ||| | |||| || || || |||||| || || Sbjct 40037 GCTCCTGAGGTGCGTAACCAGATCTTGAATG--ACGGCGGTTCGGTGCAGAATGTG-AGC 39981 Query 55715 ---ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 ||||| | ||||||||| ||| ||||||||||||||| |||||| | Sbjct 39980 TCCATTCCGAACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAG--T 39923 Query 55772 CTGATT---GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | |||| ||| || ||| ||||||||||| |||||| ||| ||||| |||||| Sbjct 39922 C-GATTCTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAAC 39864 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 || ||| | | || || |||| | | |||||||||||||||| ||||||| Sbjct 39863 ATTCACATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAG 39804 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 ||||| ||||||||||| |||||||| |||| Sbjct 39803 AAGGGGCTCAAGACGGGCATGTACTACATGCG 39772 >seq1591 Length=151785 Score = 143 bits (158), Expect = 3e-29 Identities = 249/362 (69%), Gaps = 0/362 (0%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||| || || |||||||| || | ||| || | |||||| || Sbjct 111445 ATCCCGTGCCGATACCATCACTGCCGTTGACAAGCACCATAGGGATAATAGGAATATACC 111386 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 |||||||||| | | |||||||| || || || |||| |||| ||||| | Sbjct 111385 ACTCCGGCTCAATCGACTGACCGTCTTCGTCCAGATAGTTCAGAACGTCGTTGTCTAGTG 111326 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | ||| | || || || || | | || ||||| ||||| || || || |||| Sbjct 111325 GGTCGTAGATTCGGCGCGTGAGCTGCTCCAGGTTGGTGAAAATGTAACGAGAACTAGCCG 111266 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||||| ||||| ||||| || ||||| || ||| || || |||| | | Sbjct 111265 CATCCTTACCACCCATCAGCCTTGTACCAAATTGACCAATTGGGGATAGAAGGTGAACAT 111206 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 ||||| || ||||||| ||| |||| |||||| || |||||||| || ||| |||| Sbjct 111205 TGTTGCTTCCAACGAAATCCTGCGCCATATTCACGATACAGCCCTGCAAACCCGCCTCAC 111146 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 |||||||||| || | ||||| | || ||||| ||||| || || ||||| | |||| Sbjct 111145 CGTGGTGATATGCAGAGTGCTCAGAGACATATCCAGCCAATTGTGCTACCTTGAGCTCCG 111086 Query 152234 TC 152235 || Sbjct 111085 TC 111084 >seq2750 Length=77611 Score = 118 bits (130), Expect = 1e-21 Identities = 300/447 (67%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||||||||||||||| ||||||| || | |||||| | || |||||| ||| | Sbjct 16077 CCCGTTCCGATACCCTCTGCGCCATTCACGAGCAGCATCGGGATGATAGGAACATAGTGC 16018 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA--CTCG 117269 ||||||| || | | ||| ||||| | |||| | || ||||| || |||| Sbjct 16017 ACAGGCTCAACAGGGAAACCATCGTCGTCGGCGTAGCGCAACAACGCATCATCCTCCTCG 15958 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAA--TGTAACGAGAGCTTGC 117327 | ||| | || || | || | |||| ||| ||||||||| || || Sbjct 15957 GG--GAACAGCAGACGAGTGTAC--TTCTGGAGCAGTGTAAAGATGTAACGAGGACTAGC 15902 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||||||||||| || | || || || || || || || | || | | || Sbjct 15901 GGCATCCTTGCCTCCTTGTAATCGGGTGCCAAACTGGCCTGATGGGTACAGTAAGGGAAG 15842 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 || |||| || ||| ||| || |||| ||| |||||||| || | ||||| Sbjct 15841 ATTATTGGAACCGACATAGTCCTGCGCCATGTTAACAATCGTCGAGTGCAACGAAGCCTC 15782 Query 117448 ACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGT 117506 || |||||||| ||||| ||||| | || ||||||||| ||||| |||||||| | | Sbjct 15781 GCCGTGGTGATAGGCCGTGTGCTCACTGCA-GTAGCCCGCAAGCTGGGCCACCTTGACCT 15723 Query 117507 CTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566 | ||| || || ||| ||||| ||||| | ||||||||||| ||| |||| Sbjct 15722 CACGCGTAAGCTTGCGCTTCAGGCATGCATAGAGAACCTTGCGCTGCGAAATCTTGAGAC 15663 Query 117567 CATCCGCCACGTGA-GGGATCGAACGC 117592 |||| |||| ||| || | ||| ||| Sbjct 15662 CATCAACCAC-TGACGGTAGCGACCGC 15637 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| || | || || ||||||||||| ||| | || || |||||||| Sbjct 15924 GTAAAGATGTAACGAGGACTAGCGGCATCCTTGCCTCCTTGTAATCGGGTGCCAAACTGG 15865 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || || | || | | || || |||| || || | | ||| |||| || ||| Sbjct 15864 CCTGATGGGTACAGTAAGGGAAGATTATTGGAACCGACATAGTCCTGCGCCATGTTAACA 15805 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||| |||| || || ||||||||||| ||||| ||||| | ||| ||| Sbjct 15804 ATCGTCGAGTGCAACGAAGCCTCGCCGTGGTGATAGGCCGTGTGCTCACTGCAGTAGCCC 15745 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 || | ||| |||||||| | || ||| || || ||| || || || || | ||| Sbjct 15744 GCAAGCTGGGCCACCTTGACCTCACGCGTAAGCTTGCGCTTCAGGCATGCATAGAGAACC 15685 Query 152269 TTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGC 152316 |||||||| || || | ||| || ||||| ||| || | ||| ||| Sbjct 15684 TTGCGCTGCGAAATCTTGAGACCATCAACCAC-TGACGGTAGCGACCGC 15637 >seq1234 Length=43497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 124950 CCCATGGCGTCCACATTGGCGGTATACTCGGGCTGATCAAAAGACAGTTTCACATGGGAC 125009 |||| |||||||||| ||| || ||||||| | | ||||| |||| ||||||||||||| Sbjct 7017 CCCAAAGCGTCCACATCGGCCGTGTACTCGGCCAGTTCAAATGACACTTTCACATGGGAC 6958 Query 125010 TGGGCACCTAGGTTGTACACCTC 125032 ||||| |||||||||||||| Sbjct 6957 ATTGCACCCAGGTTGTACACCTC 6935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196642234000