Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq769 315 8e-81 seq2750 168 8e-37 seq1410 141 1e-28 seq2557 136 5e-27 seq442 82.4 9e-11 >seq769 Length=43651 Score = 315 bits (348), Expect = 8e-81 Identities = 1134/1750 (65%), Gaps = 58/1750 (3%) Strand=Plus/Plus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || ||||||||||||||||||| ||||||||||| |||| | |||||| Sbjct 39765 GCGTCCGCGCATGTAGTACATGCCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCAT 39824 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || | ||||| ||| || | | ||| |||||||| |||||| |||||| Sbjct 39825 CGATGTAAGCTTGCTTTTTGTCGGTTCGGCGATGTGAATGTTCAGCGACTGACTCTGACA 39884 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 |||| | || |||||||| || | || || | ||| ||||| || || ||||| || Sbjct 39885 GATGTAGGCACCACGATCCGCAGACAGGTCCAGAATCGACTTCTGCTTGATCTCCCACAC 39944 Query 80214 -----TGTACGATACACCTT-ACGAAGCTCCTCTGGAATGTC---CAGATTTTGCACACT 80264 ||||| | | |||| ||| | || |||||| || ||| ||||| Sbjct 39945 CGTCTTGTAC--TTCTCCTTGACGTGGTTC----GGAATGGAGCTCACATTCTGCACCGA 39998 Query 80265 GCCACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 || ||||| || | || || || || |||| | ||| ||||| |||| ||| Sbjct 39999 ACCGCCGTCATTCAAGATCTGGTTACGCACCTCAGGAGCCCACACACCCAGCTCAATCAG 40058 Query 80325 ATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATA 80384 || |||| |||| |||||| | ||| |||||||||||| || ||| || || Sbjct 40059 CTCATTCATCAGGTACTTGTTCACGATGGTAAACTCTCCCGCAAGCACGCGGCGGTTGTA 40118 Query 80385 CAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGC 80444 || ||| | ||| | || || | | |||||| || ||||||||||| ||||| ||| Sbjct 40119 CATGTTGGAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGACGC 40178 Query 80445 CGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGA------TATC 80498 |||||||||||| |||||| || ||||| ||||||||| ||||||| | || Sbjct 40179 CGTCGGCATCGGCGCGACCAGGAGCGAATTGCGCAGGCCG---TTCTTGACCACCTTCTC 40235 Query 80499 CT--CGCGCAAATCTGACCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCT 80554 || ||||| | | || | | | || || ||||| ||||||| ||| || Sbjct 40236 CTTAAGCGCAGCCCAGTCCCACAGACCGGAGGAAGGC-GTGACGTCCCACATATCGAACT 40294 Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCC---TCCGTCT 80611 | ||||| |||| || || || ||| ||| ||||||||||||||| |||| Sbjct 40295 GGAAGATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTCCG--- 40351 Query 80612 TGGCCAGCTC---ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCT 80668 ||||||| || ||| ||||||| | |||| || ||| ||| |||| || Sbjct 40352 TGGCCAGTTCCATCGACGTCTCCATA---GAAGCGTAGTAGATGGTCTCGAAGATATTCT 40408 Query 80669 TGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAG 80728 |||| | | ||||||| || ||||||| ||| |||| | ||||| |||| | Sbjct 40409 TGTTGAGCTCACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCG 40468 Query 80729 CCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCG-ATCGCTCGGCCTCC 80787 | |||||||| || || || | | || ||||| ||| |||| | || || ||||| Sbjct 40469 CAAGGCCCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGC-GAGCCTCA 40527 Query 80788 GGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 || ||||| |||| |||||||| ||||||||||||||| | ||| Sbjct 40528 ATAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACG 40587 Query 80848 ACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907 || |||| || |||| ||| ||| | || || || || || || | Sbjct 40588 ACCTCATACAGCTTCTTGTAGTTGAACACGGCGTTCTCAACGAACTTGGGGAGCGCCACG 40647 Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 ||||||| |||||||||||||| || || | || |||| | | ||| |||| Sbjct 40648 GACGCCAAGTTGCACACGGCCACTTCATCGGGCGACGTGTACTCCATCACTTCACAGCAC 40707 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 || || || ||| || || ||||| | |||||| |||||| |||| |||||| Sbjct 40708 AAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTGGACTTGCGGTTGGCGGCGTCC 40767 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 ||||| |||| | || || ||||| | ||| | | || || ||| ||| | | Sbjct 40768 TTGTACAGCATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGC 40827 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTC 81146 | | || |||| ||||||| |||||| | | ||||| | | ||| || Sbjct 40828 TGTTGAGCATTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTC 40887 Query 81147 GTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTG 81206 ||||||| | || || || | || |||||| || || | || Sbjct 40888 -TCGAACTCCTCTCCCCAGCACTCGTATAGACCGGGAGCCTCGTTGGGACAGAACAAACT 40946 Query 81207 CCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAA 81266 ||| | | | | ||| ||| ||||||||| || || | ||| || || ||| Sbjct 40947 CCACTTGCCATTGGCCTCCACACGCTTCATGAACAGATCCGGCACCCACAGAGCATAGAA 41006 Query 81267 CAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 || ||| || ||| || | ||| | ||| ||||| |||||| || | || || | Sbjct 41007 CAAGTCACGTGCA-CGGTGCAGCTCGTTACCATGGTTCTTGCGCAAATCCAAGAACTCAA 41065 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCAC 81382 | || || ||||| || |||||||| | || | || |||||||| || |||| Sbjct 41066 ACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCAC 41125 Query 81383 CCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTG 81442 |||||| ||||| || || || ||||||| || |||| ||| |||||||| || | | Sbjct 41126 CCTGGTCCACGTATCGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGG 41185 Query 81443 ACTGACCGTTCGTACCCACGATACGCGACCCCT--TGGCGCGCACCTTGCTGATTGAAAG 81500 || |||||||| || ||| | | | | || || | ||| || | Sbjct 41186 ACGAGCCGTTCGTGCCGCGGAT--GTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT 41243 Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560 || ||||| || | |||||| || || |||||| | |||| || |||||||| || Sbjct 41244 GCCAATGCCTCCCGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCC 41303 Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620 || || || | | |||| | | |||||| || |||| || || | | | Sbjct 41304 TTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGAGT 41363 Query 81621 GCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATA 81680 || ||||||||||| || ||||| ||||| |||| | | ||||| || || || Sbjct 41364 ACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTA 41423 Query 81681 GGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739 || || || ||| | || ||||| ||| || || | ||| || ||||| | || Sbjct 41424 AGTCTCAAGTGCCGCCTTGATGTTCGTC-TTGTGGATGCCTAGAGCCACGCGCATGATCA 41482 Query 81740 TGTACTGGGG 81749 | | |||||| Sbjct 41483 TCTGCTGGGG 41492 >seq2750 Length=77611 Score = 168 bits (186), Expect = 8e-37 Identities = 203/274 (74%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 |||| || || |||||| ||| ||||||||||| | || || ||||| ||| || Sbjct 15653 GTGGTTGATGGTCTCAAGATTTCGCAGCGCAAGGTTCTCTATGCATGCCTGAAGCGCAAG 15712 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA--GAGCAAACGGCCT 32095 || || |||| | |||||||| ||||| |||||||| ||| ||||| ||||||| Sbjct 15713 CTTACGCGTGAGGTCAAGGTGGCCCAGCTTGCGGGCTAC--TGCAGTGAGCACACGGCCT 15770 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 |||||||||||||||| ||| | || || ||||| ||| | || ||| ||| ||||| Sbjct 15771 ATCACCACGGCGAGGCTTCGTTGCACTCGACGATTGTTAACATGGCGCAGGACTATGTCG 15830 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 || | ||||| || |||||| | ||||| || |||||||| ||||| | || | Sbjct 15831 GTTCCAATAATCTTCCCTTACTGTACCCATCAGGCCAGTTTGGCACCCGATTACAAGGAG 15890 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||||||||| || || | ||||||||||| || Sbjct 15891 GCAAGGATGCCGCTAGTCCTCGTTACATCTTTAC 15924 >seq1410 Length=10983 Score = 141 bits (156), Expect = 1e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 2647 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 2588 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| |||||||||||||||||||| || ||| Sbjct 2587 TCGGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGAATTCCACCTGAC 2528 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| |||||||| | || || || | ||||| Sbjct 2527 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTAC 2468 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 2467 AACATCCAGAAGG 2455 >seq2557 Length=41672 Score = 136 bits (150), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||||||| || || || || ||| | Sbjct 10015 ATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCC 9956 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 9955 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 9896 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 9895 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 9837 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || ||||| || || | |||||||| || ||| Sbjct 9836 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGTCTTCGTGGCGGA 9788 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||||||| || || || || ||| | Sbjct 14104 ATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCC 14163 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 14164 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 14223 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 14224 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 14282 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || | |||||||| || || Sbjct 14283 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGTCTTCGTGGCGG 14330 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||||||| || || || || ||| | Sbjct 13876 ATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCC 13935 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| ||||| ||||| || |||||||| || || || || |||||| Sbjct 13936 GACTCAATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 13995 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || || || ||||| || ||||| | ||| || || ||| ||||| || Sbjct 13996 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGC-GACTACAA 14054 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || || | || || || ||||| Sbjct 14055 CATCCAGAAGGAGTCTACACTTCACCTGGTGCTTCGCCTGCGTGGTGG 14102 >seq442 Length=77766 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||| || || |||||||||||||| || || ||||| ||||| || ||||| | || Sbjct 69714 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGC 69773 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | ||||| || |||| ||||| ||| || || || || ||||||| || Sbjct 69774 ACTCTGTCGGACTACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGTCTGCGT 69833 Query 27628 GGTGG 27632 ||||| Sbjct 69834 GGTGG 69838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570290225269600