Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2551 179 3e-40 >seq2551 Length=89002 Score = 179 bits (198), Expect = 3e-40 Identities = 457/679 (67%), Gaps = 25/679 (4%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || |||| | |||||| ||||| || || || | ||||| Sbjct 774 AGCTGCTTCTGAAGCGGCTCTACGTGGTTCAGGTATACGTGTGCATCGCCAATAATGTGG 833 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA-CGTGAGGAGAGAGTA 29982 | ||| || || |||| | || | || || |||| || || ||| || || | || Sbjct 834 ATAAATTCGCCAGGTTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 892 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||||||||| || || || ||||| |||||||| |||| | |||||| | ||| || Sbjct 893 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCCGAACGCTGGTACATCTGGCA 952 Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||| | ||| || || ||||||||||||||| | ||||||||| || || ||||| Sbjct 953 CGACAACTCGCCATCCGCCACGTAAAACTGACAAAACATGTGGCACGGCGGCAGCGCCAT 1012 Query 30103 GAGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC-TTCTGGG 30157 | || || || || ||||| || ||| | || || | ||| || | Sbjct 1013 ----CTCATTGAGATCCGCCGGATTCCACGCAGACAGCACAATCCGACGGTCGGTCGAGT 1068 Query 30158 TTGTTC-CTG-ATGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAG 30214 | || | | | || || ||| | || || |||||||| ||| || | |||| Sbjct 1069 TCGTGCGCAGTTTGTGGATCAC----CTCAGCAAGTTGATCCACTCCCTGTCCAGTGTAG 1124 Query 30215 TCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGT 30274 ||||| ||| |||||||||| ||||| || || | ||||||||| || ||||| ||| Sbjct 1125 TCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATACACTGGT 1184 Query 30275 CCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCG 30334 ||||| ||||| ||||||| || | || | |||||||| | |||| || || Sbjct 1185 CCCAGATCTCCTACTTCCCTCGACTGCAGTCCACGACTGTCCAAATACTCTCGCGATCCA 1244 Query 30335 TTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTG 30394 ||| | |||||||| | | |||||| | | | || | || ||| || Sbjct 1245 TTGCCATCCCAGATATGAATGTCCTTCTGCTGCAACGTATGGGCACTCGTATCCCCACTA 1304 Query 30395 ACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAG 30453 | ||||||||||| |||||| | || | |||| || || |||| ||||| || | Sbjct 1305 ATGAACCACAGCAATTCCTCCGCCACACCTCTCCAGAACACTTTCTTAGTCGTCAGCAAT 1364 Query 30454 GGGAA---ACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACAAGACTCC 30510 ||||| | | |||| | || | | | | ||||| |||||||| ||||| | ||| Sbjct 1365 GGGAACACATTATCCC-TCAGACTGAAGCGCATCTGAGCCCCAAACACCGACAA-AGTCC 1422 Query 30511 C-GTGCCCGTCCTGTCTCC 30528 | || || |||| |||||| Sbjct 1423 CTGTTCCTGTCCGGTCTCC 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406296386100360