Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2557 145 7e-30 >seq2557 Length=41672 Score = 145 bits (160), Expect = 7e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| |||| || || || ||||| || || Sbjct 14103 CATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTC 14162 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||| || | || || || ||||| |||||||| |||||||| || || || || Sbjct 14163 CGACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCA 14222 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| ||| || || | ||| ||||| Sbjct 14223 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAA 14282 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || |||||||| || Sbjct 14283 CATCCAGAAGGAGTCTAC 14300 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| |||| || || || ||||| || ||| Sbjct 10015 ATGCAGATCTTTGTGAAGACACTGACTGGCAAGACTATCACGCTCGACGTGGAGCCTTCC 9956 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || ||||| |||||||| |||||||| || || || || Sbjct 9955 GACTCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 9896 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| ||| || || | ||| |||||| Sbjct 9895 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 9836 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 9835 ATCCAGAAGGAGTCTAC 9819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434903014761600