Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2551 192 5e-44 >seq2551 Length=89002 Score = 192 bits (212), Expect = 5e-44 Identities = 463/695 (67%), Gaps = 7/695 (1%) Strand=Plus/Plus Query 6505 GGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTA 6564 |||||| ||||| || ||| ||||| || | ||| |||| | |||||||||||| Sbjct 749 GGGGAATGGTCGCGGGGTGCGTGCTAGCTGCTTCTGAAGCGGCTCTACGTGGTTCAGGTA 808 Query 6565 GATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGC 6624 | || ||||| || | | || | | || ||||| ||| || | || || || Sbjct 809 TACGTGTGCATCGCCAATAATGTGGATAAATTCGCCAGGTTTCAAACCAGCCACTTGGGC 868 Query 6625 GATCATGTA-CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | || || ||| || || || ||||| || |||||||||||||| || | ||||||| Sbjct 869 CA-CAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATGT 927 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGA 6743 | |||| || || || | |||||| |||| ||| |||| ||| ||||| || || || | Sbjct 928 CAGCCGAACGCTGGTACATCTGGCACGACAACTCGCCATCCGCCACGTAAAACTGACAAA 987 Query 6744 GGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCA 6803 |||||||||| || ||||||||| | ||||||| ||| |||||||| ||| || Sbjct 988 ACATGTGGCACGGCGGCAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCAGACAGCA 1047 Query 6804 CGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCC 6862 | |||| | ||| | |||| || ||| |||||| | | || || || ||| Sbjct 1048 CAATCCGACGGTCGGTCGAGTTCGTGCGCAGTTTGTGGATCACCT-CAGCAAGTTGATCC 1106 Query 6863 GCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCAC 6922 |||||||||| | ||||| || | | || |||| || |||||||| | |||| Sbjct 1107 ACTCCCTGTCCAGTGTAGTCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCAC 1166 Query 6923 TGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCC 6982 ||||| || || || || |||| || || | |||| || | | || || ||||| Sbjct 1167 TGGAATCCATACACTGGTCCCAGATCTCCTACTTCCCTCGACTGCAGTCCACGACTGTCC 1226 Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTG 7042 | | | ||||| || || | | |||||||| | | || | | | | | Sbjct 1227 AAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAACGTATGG 1286 Query 7043 GTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACA 7102 | |||| |||| || | ||||||||||| ||||| |||| || ||||| |||| Sbjct 1287 GCACTCGTATCCCCACTAATGAACCACAGCAATTCCTCCGCCACACCTCTCCAGAACACT 1346 Query 7103 CGTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCG 7159 || |||||||||| || || | ||| || || | || ||| | || Sbjct 1347 TTCTTAGTCGTCAGCAATGGGAACACATTATCCCTCAGACTGAAGCGCATCTGAGCCCCA 1406 Query 7160 AACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 ||||| || | ||||| || || |||||||| || Sbjct 1407 AACACCGACAAAGTCCCTGTTCCTGTCCGGTCTCC 1441 Score = 192 bits (212), Expect = 5e-44 Identities = 463/695 (67%), Gaps = 7/695 (1%) Strand=Plus/Minus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || |||||||| || || ||||| | || ||||| || | ||| || | || || Sbjct 1441 GGAGACCGGACAGGAACAGGGACTTTGTCGGTGTTTGGGGCTCAGATGCGCTTCAGTCTG 1382 Query 34211 CGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| | || || |||||||||| || |||| ||||| || |||| ||| Sbjct 1381 AGGGATAATGTGTTCCCATTGCTGACGACTAAGAAAGTGTTCTGGAGAGGTGTGGCGGAG 1322 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 || ||||||||||| | || |||| |||| || | | | | || | Sbjct 1321 GAATTGCTGTGGTTCATTAGTGGGGATACGAGTGCCCATACGTTGCAGCAGAAGGACATT 1262 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||| | | || || ||||| | | |||||| || || | | || || Sbjct 1261 CATATCTGGGATGGCAATGGATCGCGAGAGTATTTGGACAGTCGTGGACTGCAGTCGAGG 1202 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | || || |||| || || || || ||||||||| | |||||||| || |||| Sbjct 1201 GAAGTAGGAGATCTGGGACCAGTGTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTAC 1142 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 || | | || ||||| | |||||||||| ||| || || || | | |||||| | Sbjct 1141 ACGGATATGCATGCAGACTACACTGGACAGGGAGTGGATCAACTTGCTG-AGGTGATCCA 1083 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 || || |||| | ||| | |||| ||| ||| |||||||| ||| ||| Sbjct 1082 CAAACTGCGCACGAACTCGACCGACCGTCGGATTGTGCTGTCTGCGTGGAATCCGGCGGA 1023 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 |||| | ||||||||| || |||||||||| | || || || ||||| ||| |||| Sbjct 1022 TCTCAATGAGATGGCGCTGCCGCCGTGCCACATGTTTTGTCAGTTTTACGTGGCGGATGG 963 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||| |||| |||||| | || || || |||| |||||||| | || ||||||||||| Sbjct 962 CGAGTTGTCGTGCCAGATGTACCAGCGTTCGGCTGACATGGGCCTCGGCGTGCCGTTCAA 903 Query 34687 CATTGCTAGTTACGCTCTGCTCACG-TACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 ||| || ||||| || || || ||| || || | || || || | || ||| |||| Sbjct 902 CATCGCCAGTTATGCGCTACTGACGCGACTTG-TGGCCCAAGTGGCTGGTTTGAAACCTG 844 Query 34746 GGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCC 34805 | || | | || | | || ||||| || | |||||||||||| | |||| ||| | Sbjct 843 GCGAATTTATCCACATTATTGGCGATGCACACGTATACCTGAACCACGTAGAGCCGCTTC 784 Query 34806 GGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCC 34840 || ||||| ||| || ||||| |||||| Sbjct 783 AGAAGCAGCTAGCACGCACCCCGCGACCATTCCCC 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448246542717600