Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq110 168 2e-36 seq2557 145 2e-29 seq1038 125 2e-23 seq1410 120 7e-22 seq23 109 1e-18 seq1229 102 2e-16 seq769 87.8 4e-12 >seq110 Length=1317 Score = 168 bits (186), Expect = 2e-36 Identities = 195/263 (74%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 7465 TTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCG 7524 |||||||||||| | ||||| | |||||| | | || | | |||||| | || Sbjct 5 TTTTCTGGTATTGTTGGTACAACATTTTCACTTTTAATTCGTATGGAATTATCACAACCA 64 Query 7525 GGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCC 7584 ||| |||||| || | |||||| ||| | || || || ||| |||| || ||||| Sbjct 65 GGTAATCAAATTTTAATGGGTAATCATCAATTATATAATGTAATTGTTACTGCACATGCT 124 Query 7585 TTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTC 7644 ||| ||||| | || ||| | |||||||| | | | || || || || || ||||| || Sbjct 125 TTTATTATGGTATTTTTTCTAGTTATGCCTGCTTTAATTGGTGGATTTGGTAATTGGTTT 184 Query 7645 GTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTT 7704 ||||||||||||| ||||||||||||||||||||||| | | || |||||||||||| Sbjct 185 ATTCCTTTAATGATCGGTGCTCCTGATATGGCTTTTCCTCGTATGAATAATATAAGTTTT 244 Query 7705 TGATTACTACCGCCTTCCTTATT 7727 || ||| |||| || || ||||| Sbjct 245 TGGTTATTACCACCATCATTATT 267 Score = 118 bits (130), Expect = 3e-21 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | |||||| Sbjct 486 AAAGGTAATCTATGGAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAATAAAA 427 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| |||||||| || || | | |||||||||||| || |||||||| Sbjct 426 TTAATAGCACCTAATAGAGAAGACATTCCAGATAAATGTAAACTAAAAATAGCTAAATCT 367 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || ||||| || |||| | || ||| || || |||||||| || ||| Sbjct 366 ACAGAAGGTCCTGAGTGTGCTTGTACACTTGA---TAAAGGTGGATAAACTGTCCAACCG 310 Query 371542 GT 371543 || Sbjct 309 GT 308 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| ||||||||||| || |||||||||||||| | | ||||| ||||| || || Sbjct 664 TTCAGGGTGACCAAAAAACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCAGA 605 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| ||||| ||||||||||||||||| |||| Sbjct 604 AGGATCATAAAATGATGTATTTAAATTTCTATCAGTTAATAACA 561 >seq2557 Length=41672 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || |||| ||||| ||| || || Sbjct 9794 ACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 9853 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 9854 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 9913 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| || ||||||||| ||||| | ||| || | |||||||| | Sbjct 9914 TTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAG 9973 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 |||||| |||||||| |||| Sbjct 9974 CGTGATAGTCTTGCCAGTCA 9993 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || |||| ||||| ||| || || Sbjct 14325 ACGAAGACGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 14266 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 14265 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 14206 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| || ||||||||| ||||| | ||| || | |||||||| | Sbjct 14205 TTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAG 14146 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 |||||| |||||||| |||| Sbjct 14145 CGTGATAGTCTTGCCAGTCA 14126 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| ||| || || | || || Sbjct 14087 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 14028 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| ||||| || |||||||||||| Sbjct 14027 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 13968 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||||| ||||| | ||| || | |||||||| | |||||| ||| Sbjct 13967 TGGATTTTCTGCTTCACATTGTCGATTGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTC 13908 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 13907 TTGCCAGTCA 13898 >seq1038 Length=1391 Score = 125 bits (138), Expect = 2e-23 Identities = 96/113 (85%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| Sbjct 1032 AATATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATAAGCTGAAACATCACCG 973 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTT 4583 ||||| ||||| | || ||||| ||||||| || |||||||| ||||||| Sbjct 972 GCTTGAGTTTCAATAATAGGTAGTGCTGTTAAAGAACCACCACC--AATTTTT 922 Score = 102 bits (112), Expect = 2e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 |||||| | || || || |||||||||| | |||| |||||||||||||||||||| || Sbjct 707 CAATACTTAGCACCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGACAA 766 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||| ||||| | || ||||||||| ||||||| Sbjct 767 CATGCTGTAATCTTTTATGATGATTTATCTAAACAA 802 >seq1410 Length=10983 Score = 120 bits (132), Expect = 7e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || || | || || || |||||||| || |||||||| Sbjct 2457 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2516 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || |||||||| ||||| || ||||| ||| || Sbjct 2517 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2576 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 ||| |||| || | |||||||| | |||||| ||||||||||||| Sbjct 2577 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCA 2622 >seq23 Length=1150 Score = 109 bits (120), Expect = 1e-18 Identities = 101/125 (81%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 239 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 298 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGA 6864 |||| ||| | || ||||||||||| |||| || ||||||| ||| |||||||||| | Sbjct 299 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAATGAGCGGAAGCTTGATCCA 357 Query 6865 GTAAT 6869 | ||| Sbjct 358 GCAAT 362 Score = 95.1 bits (104), Expect = 3e-14 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 926 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 867 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 866 GACTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 807 Query 7850 TACGCGTTAGCT 7861 ||||||||||| Sbjct 806 AACGCGTTAGCT 795 >seq1229 Length=2640 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 1566 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 1507 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 1506 GTAACATGATGTATAGGGTCTGACAC 1481 >seq769 Length=43651 Score = 87.8 bits (96), Expect = 4e-12 Identities = 169/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 193502 CTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGC 193561 ||||||| ||| || | |||||| ||||| | ||||| |||| |||| ||| Sbjct 40740 CTGGTTGGACTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAAGGCACGCCCGTCTCAAT 40799 Query 193562 TTGAGCGACGAGAAT-GTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTC 193620 || ||| | ||||| | || ||| || | |||||| || | |||| | | ||| | Sbjct 40800 CTGCGCGTCCAGAATAGCGAA-CCACAGCTGTTGAGCATTGATTGTCTTGCGGGCGCGGC 40858 Query 193621 CTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGAC 193680 |||| | ||||||||| || |||| ||| || || | ||| || |||| |||| Sbjct 40859 CTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTATAGAC 40918 Query 193681 CGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGA 193740 ||||||| || || || || || | |||||| | |||| ||||| | |||||||| Sbjct 40919 CGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGA 40978 Query 193741 AGAGGTC 193747 | || || Sbjct 40979 ACAGATC 40985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192487959564020