Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2557 131 4e-25 seq1410 111 4e-19 seq442 86.0 1e-11 >seq2557 Length=41672 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| |||||||| || ||||||||||| ||| | || | || || Sbjct 9804 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 9863 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || ||| |||||||| ||| Sbjct 9864 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 9923 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || ||| | || | ||| ||| ||| || || || || ||||| Sbjct 9924 TGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTC 9983 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| |||| |||||| || Sbjct 9984 TTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTT 10018 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| |||||||| || ||||||||||| ||| | || | || || Sbjct 14087 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 14028 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || ||| |||||||| ||| Sbjct 14027 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 13968 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || ||| | || | ||| ||| ||| || || || || ||||| Sbjct 13967 TGGATTTTCTGCTTCACATTGTCGATTGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTC 13908 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| |||| |||||| || Sbjct 13907 TTGCCAGTCAGTGTCTTCACAAAGATCTGCATCTT 13873 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| |||||||| || ||||||||||| ||| | || | || || Sbjct 14315 AGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 14256 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || ||| |||||||| ||| Sbjct 14255 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCT 14196 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || ||| | || | ||| ||| ||| || || || || ||||| Sbjct 14195 TGGATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTC 14136 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||||||| |||| |||||| Sbjct 14135 TTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 14104 >seq1410 Length=10983 Score = 111 bits (122), Expect = 4e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || ||||||||||| Sbjct 2457 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2516 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | | ||||| ||||| || || ||||| || |||||| | || Sbjct 2517 AGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2576 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| || ||| || || || || || || |||||||| || |||||||| ||| Sbjct 2577 ATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2636 Query 152097 ACCTGCATTTTACCCT 152112 | |||||| | |||| Sbjct 2637 ATCTGCATGATTCCCT 2652 >seq442 Length=77766 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || || ||||| || |||||| | || | |||||| || ||| || || Sbjct 69645 CCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCG 69586 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||||||||||| ||||| ||||| | ||||||||| Sbjct 69585 AGCGTGATGGTTTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTT 69539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153778963178930