Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712645.1_202016-08- 24] 2,830 sequences; 37,002,228 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2557 138 8e-28 seq1410 125 5e-24 seq442 100 2e-16 >seq2557 Length=41672 Score = 138 bits (152), Expect = 8e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||||||||| || |||||| ||||||||||| || Sbjct 14106 CATGCCACCACGCAGGCGAAGCACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTC 14047 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| ||||| ||||||| ||||||||| || | Sbjct 14046 GCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGG 13987 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || || |||||||||| | | || | ||||| | || Sbjct 13986 CGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTCACATTGTCGATTGAGTCGGAAGGCTC 13927 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||| || ||||| || || || |||||||| ||||| ||||| Sbjct 13926 CACGTCGAGCGTGATAGTCTTGCCAGTCAGTGTCTTCACAAAGATCTGCAT 13876 Score = 138 bits (152), Expect = 8e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| ||| || ||| |||| || Sbjct 14313 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 14254 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | |||||||| || Sbjct 14253 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 14194 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||||| | ||||| || | ||| || ||||| Sbjct 14193 GATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 14134 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || |||||||| ||||| |||||| Sbjct 14133 GCCAGTCAGTGTCTTCACAAAGATCTGCATG 14103 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| ||| || ||| |||| || Sbjct 9806 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 9865 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| ||||||||| || | || | |||||||| || Sbjct 9866 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 9925 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || |||||||||| | | || | ||||| | ||||| || | ||| || ||||| Sbjct 9926 GATTTTCTGCTTCACATTGTCGATCGAGTCGGAAGGCTCCACGTCGAGCGTGATAGTCTT 9985 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||| ||||| ||||| Sbjct 9986 GCCAGTCAGTGTCTTCACAAAGATCTGCAT 10015 >seq1410 Length=10983 Score = 125 bits (138), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | || ||| |||| || |||||||| ||||| |||| Sbjct 2455 CCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2514 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | || | || ||||| ||| || |||||||| || ||| Sbjct 2515 TCAGACGCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 2574 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||| |||| | | ||||| || | ||| || ||||| ||||| ||||||||||| Sbjct 2575 --CAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 2632 Query 44326 GAAGATTTGCATGAT 44340 ||||| |||||||| Sbjct 2633 AAAGATCTGCATGAT 2647 >seq442 Length=77766 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||||||||||| ||||||||||| || | Sbjct 69838 CCACCACGCAGACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 69779 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| |||| ||||||||||| || || ||||||| ||||||||| || Sbjct 69778 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 69726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359977983706110