Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1680 179 3e-40 >seq1680 Length=186158 Score = 179 bits (198), Expect = 3e-40 Identities = 422/621 (68%), Gaps = 17/621 (3%) Strand=Plus/Minus Query 97008 TGGGAAA-GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGA-GAGCATCAATGTGATTCACA 97065 ||||||| || | || || ||||| ||||||| | ||| | | || ||||| |||| Sbjct 180747 TGGGAAATGGTCGCGGGGTGCGCGTTAGCTGCT-TCTGAAGCGGCTCTATGTGGTTCAGG 180689 Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || | ||| ||||| || | | |||| |||||||| |||| ||| ||| || ||| Sbjct 180688 TATACGTGTGCATCACCAATAATGTGGATAAATTCGCCAGATTTCAAACCAGCCACTTGG 180629 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || | | | || | ||| | ||| || || ||||| || ||||| || || ||||| Sbjct 180628 GCCACAAGTCGCGTCAGTAGCGCATAACTGGCGATGTTGAACGGCACGCCGAGGCCCATG 180569 Query 97186 TCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTC 97245 |||||||| | || || | || || || | | ||||| ||| |||||||||| Sbjct 180568 TCAGCTGAACGCTGGTACATTTGGCACGACAATTCGCCATCCGCCACGTAAAACTGACAA 180509 Query 97246 AATACATGACAGGGGGGCAACGCCATTT--TTGGAACATCTAAGACATTCCAAGCACACA 97303 || | ||||| || |||| |||||| | ||| | |||| |||||| ||| ||| Sbjct 180508 AACATGTGACATGGTGGCAGCGCCATCTCATTG--AGATCTGCCGGATTCCACGCAGACA 180451 Query 97304 TCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGAT 97363 || || | | ||||| ||||| ||| | | | | || | || | ||||| Sbjct 180450 ACACAATCCGACGGTCGGTCGGGTTCGTGCGCAATTTGTGGATCACCTCAGCAAGTTGAT 180391 Query 97364 CAACGCCTTCTCCACCATAAT-TG--TGCTTAAGACCTTGATATTCTGCTCCAAAATGCC 97420 | || |||| |||| || | || ||| || || || || | |||||||| || | Sbjct 180390 CCACCCCTTGTCCAGTGTAGTCTGCATGCATAT--CCGTG-TACTTGGCTCCAAAGTGAC 180334 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG-AAACCAAGC 97479 ||| |||||||||||||| ||||| ||||||||| |||| || | || | | ||| Sbjct 180333 GCCACTGGAATCCATAAACTGGTCCCAGGTCTCCTACTTCCCT-TGACTGCAGTCCACAA 180275 Query 97480 TTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCA-CACCAGATGCTGCAAG 97538 | || ||||| | |||||||| ||||||| || || | || ||||||| Sbjct 180274 CTGTCCAAATACTCTCGCGATCCATTGCCATCCCAGATATGAATGTCCTTCTGCTGCAGC 180215 Query 97539 CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCA 97598 | | || || ||| || || || ||||||| ||||| ||| | ||||||||||| Sbjct 180214 GTATGCGCACTC-GTATCCCCACTAATGAACCACAGTAATTCCTCCGCCACACCTCTCCA 180156 Query 97599 AAATACTCTCTTAGTTGTTAA 97619 |||||||||||||| || || Sbjct 180155 GAATACTCTCTTAGTCGTCAA 180135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346773763586540