Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1134 125 8e-24 seq542 118 1e-21 seq160 91.5 2e-13 >seq1134 Length=11309 Score = 125 bits (138), Expect = 8e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 8669 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 8610 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | | |||||||||| |||||| || |||| | | | Sbjct 8609 TCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 8551 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | |||| || ||||| |||| ||||||||| |||||||| || ||||| ||| Sbjct 8550 TCAATGCTGTCCGACGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 8491 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 8490 AAGATCTGCAT 8480 >seq542 Length=20326 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || ||| || || |||| || Sbjct 462 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 521 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | ||| | || |||||||| Sbjct 522 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 581 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| || || | | | | || ||| | ||||| |||| ||||||||| || Sbjct 582 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 641 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||||| || ||||| |||||||| ||||| || Sbjct 642 GCCCGTCAGTGTCTTCACAAAGATCTGCATCTT 674 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || ||| || || |||| || Sbjct 4746 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 4687 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | ||| | || |||||||| Sbjct 4686 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 4627 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| || || | | | | || ||| | ||||| |||| ||||||||| || Sbjct 4626 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 4567 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||||| || ||||| |||||||| ||||| || Sbjct 4566 GCCCGTCAGTGTCTTCACAAAGATCTGCATCTT 4534 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || ||| || || |||| || Sbjct 6 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 65 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | ||| | || |||||||| Sbjct 66 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 125 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| || || | | | | || ||| | ||||| |||| ||||||||| || Sbjct 126 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 185 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| || ||||| ||||| Sbjct 186 GCCCGTCAGTGTCTTCACGAAGATCTGCAT 215 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || ||| || || |||| || Sbjct 234 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 293 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | ||| | || |||||||| Sbjct 294 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 353 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| || || | | | | || ||| | ||||| |||| ||||||||| || Sbjct 354 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 413 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| || ||||| ||||| Sbjct 414 GCCCGTCAGTGTCTTCACGAAGATCTGCAT 443 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || ||| || || |||| || Sbjct 4974 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 4915 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | ||| | || |||||||| Sbjct 4914 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 4855 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| || || | | | | || ||| | ||||| |||| ||||||||| || Sbjct 4854 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 4795 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| || ||||| ||||| Sbjct 4794 GCCCGTCAGTGTCTTCACGAAGATCTGCAT 4765 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || ||| || || |||| || Sbjct 5202 CACCAGGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCCTC 5143 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | ||| | || |||||||| Sbjct 5142 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 5083 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| || || | | | | || ||| | ||||| |||| ||||||||| || Sbjct 5082 GATTTTCTGCTTCACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATGGTCTT 5023 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| || ||||| ||||| Sbjct 5022 GCCCGTCAGTGTCTTCACGAAGATCTGCAT 4993 >seq160 Length=67763 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| || | ||||||||||| || || ||||| || | |||||| || | Sbjct 8617 ACGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCC 8676 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||| || |||||||| |||||||| || || ||||||||||| | ||| Sbjct 8677 GTCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 8724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571800288222160