Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1680 138 2e-27 >seq1680 Length=186158 Score = 138 bits (152), Expect = 2e-27 Identities = 409/622 (66%), Gaps = 14/622 (2%) Strand=Plus/Plus Query 35234 ACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGC 35293 || || |||| | | ||||||||||| || | ||| ||| | ||||||||| || || Sbjct 180138 ACGACTAAGAGAGTATTCTGGAGAGGTGTGGCGGAGGAATTACTGTGGTTCATTAGTGGG 180197 Query 35294 AATAC-AGA-CGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGT 35351 |||| || ||| | | || ||||| | || || |||||| | | ||||| | Sbjct 180198 GATACGAGTGCGCATACGCTGCAGC--AGAAGGACATTCATATCTGGGATGGCAATGGAT 180255 Query 35352 CGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCG 35411 |||| || | |||||||||| | || | | || | || ||||| ||||||| | Sbjct 180256 CGCGAGAGTATTTGGACAGTTGTGGACTGCAGTCAAGGGAAGTAGGAGACCTGGGACCAG 180315 Query 35412 TATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT---GATACCTGTTCTTCCGATT 35468 | || |||||||| |||||||| ||||| || | || |||| || | | || | Sbjct 180316 TTTATGGATTCCAGTGGCGTCACTTTGGAGCCAAGTACACGGATA--TGCA-TGCAGACT 180372 Query 35469 ATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAG 35528 | |||||| | || | |||||| | || | | | | | || | || || Sbjct 180373 ACACTGGACAAGGGGTGGATCAACTTGCTGAGGTGATCCACAAATTGCGCACGAACCCGA 180432 Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 || | |||| | || | || |||||||| ||||| | ||||| || | Sbjct 180433 CCGACCGTCGGATTGTGTTGTCTGCGTGGAATCCGGCAGATCTCAATGAGATGGCGCTGC 180492 Query 35589 CTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGT 35648 | ||||| |||||| | ||| ||||| ||||| |||| |||||||||||||| ||| Sbjct 180493 CACCATGTCACATGTTTTGTCAGTTTTACGTGGCGGATGGCGAATTGTCGTGCCAAATGT 180552 Query 35649 ATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCT 35706 | ||||| ||| || ||| || | |||||||| ||||| || || || | || Sbjct 180553 ACCAGCGTTCAGCTGACATG--GGCCTCGGCGTGCCGTTCAACATCGCCAGTTATGCGCT 180610 Query 35707 TCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCT 35766 ||||| | || ||||| ||| ||| | ||| | || || ||||||| || | | Sbjct 180611 ACTGACGCGACTTGTGGCCCAAGTGGCTGGTTTGAAATCTGGCGAATTTATCCACATTAT 180670 Query 35767 TGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCAGTTGTGCCGCGT 35826 |||||| |||||| | || | |||||| ||| | | |||||||| | ||| Sbjct 180671 TGGTGATGCACACGTATACCTGAACCACATAGAGCCGCTTCAGAAGCAGCTAACGCGCAC 180730 Query 35827 CCCTAGACCATTCCCTAAGTTG 35848 ||| ||||||| || | |||| Sbjct 180731 CCCGCGACCATTTCCCACGTTG 180752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989553291353010