Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2405 174 2e-38 seq918 129 8e-25 >seq2405 Length=255098 Score = 174 bits (192), Expect = 2e-38 Identities = 392/585 (67%), Gaps = 7/585 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || ||| || || || ||||| ||| || || | |||||| || |||||||| | Sbjct 48840 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 48781 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | | || || ||||| || |||||||| || ||||| || ||||| ||| || || | Sbjct 48780 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 48721 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTG 50130 | ||||||||||| || || || ||||| || | ||| | ||| || || | || Sbjct 48720 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 48661 Query 50131 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 || || ||| || | |||||| |||||||| | ||||| || || || || | Sbjct 48660 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 48601 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | ||| | || | || || || | || || | || || || || | || Sbjct 48600 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 48541 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 |||| || || || ||||| |||||||| || || || |||||||| || | ||||| Sbjct 48540 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 48481 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTC--AGCTAAATTTTCATTCACTATTCCGTC 50366 | | | ||| ||||| | | ||| |||| ||| | || || ||||| || || || Sbjct 48480 CAGGCACCTGTACTTCATTGCTAAA--GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 48423 Query 50367 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT 50426 |||||| ||||| || ||||| || || || || || || |||||| ||| || || Sbjct 48422 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 48363 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 ||| || |||| || | | || | |||||| | ||||| || ||||| Sbjct 48362 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 48303 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 ||||| || ||||| | ||| | ||| || | ||||| ||||| Sbjct 48302 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAA 48258 >seq918 Length=42645 Score = 129 bits (142), Expect = 8e-25 Identities = 778/1238 (63%), Gaps = 16/1238 (1%) Strand=Plus/Plus Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 |||| || ||||| ||||| || ||||| ||||| || | || || | || || || | Sbjct 40212 CGTAGTAGATGGTCTCGAAGATATTCTTGTTGAGCTCACGCGCCTCCGGACTCTCGAACG 40271 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 | | | | ||| || || ||||| || | || || ||||||||||| | ||| | | Sbjct 40272 CAAAGTCCATGAGGATGAAAGCGTCCGCAAGGCCCTGCACACCAATACCAACAGGACGGT 40331 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | | | || ||| | ||| || || || || || || | || || | || | Sbjct 40332 GACGCATGTTGGAATTGCGAGCCTCAATAACGGGGTAGTAGTTGACGTCGATGACCTTGT 40391 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT-CGTCCA 79593 | || || | || || ||||| ||||| | || || | | ||| || | Sbjct 40392 TCAGGTTGCGTGTGATCACCTTGACGACATCATACAGCTTCTTGTAGTTGAATACGGCGT 40451 Query 79594 TCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 79653 ||| || ||| || | ||| || || |||| || || ||||| ||||||| || Sbjct 40452 TCTCA-ACGAACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGC 40510 Query 79654 TCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGT 79713 || ||| | || | |||| ||| | ||| || | ||| || || | || || Sbjct 40511 GACGTATACTCCATCACTTCACAGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGC 40570 Query 79714 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 |||||| ||| ||| || ||||| || | ||||| || || || |||||| Sbjct 40571 TGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATC 40630 Query 79774 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTAT---CTC 79830 || | || | ||| || ||| | | |||| || ||| | |||| | Sbjct 40631 TGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGATTGT---CTTGCGGGCGCGG 40687 Query 79831 TTTTCTCTTTCGTATTGTGTATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAA 79889 ||| | ||||| | | | | | ||| |||||||| |||||||| |||| | Sbjct 40688 CCTTCACGCTCGTACT-TCTCAAACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAG 40746 Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCAT 79949 || ||| |||| ||||| | ||| ||||| |||| ||| || || ||||| Sbjct 40747 ACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCAT 40806 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 || ||||| || | ||| ||||| ||| || | || | | | ||| |||||| | Sbjct 40807 GAATAGATCCGGCACCCACAGAGC-ATAGAACAAGTCACGTGCACGGTGCAGCTCGTTAC 40865 Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 | ||||| ||||| | |||| | | | ||||| ||||||||||||| || | Sbjct 40866 CATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAA 40925 Query 80069 TGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128 | || | |||| ||||| ||| ||||| || | ||| | || || | ||| Sbjct 40926 TCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAA 40985 Query 80129 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 80188 | |||| || ||| || || || || ||||| | || || || ||| ||| ||||| Sbjct 40986 ACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGT 41045 Query 80189 CACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 | | || || || | | | | |||| || || || |||||| || ||||| | Sbjct 41046 TAGTAGCTCGGATGTTGTGCATACTGAT--GCCAATGCCTCCTGCCCACTTGGAGATGCA 41103 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || || |||| | || ||||| ||||| || || ||||| |||| | | Sbjct 41104 CGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAA 41163 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 || || ||||| ||| |||| || || ||||| || | || || | ||||| Sbjct 41164 GAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTG 41223 Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 80426 || || |||||| |||| || | ||| ||||||| || | | || | | | Sbjct 41224 GGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGTCTT 41283 Query 80427 ATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATT 80486 || || |||| || || ||||| | ||| ||||| || | ||| || | ||| | Sbjct 41284 GTGGATGCCTAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTTGCCGTG 41343 Query 80487 TATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 80546 | || | || | |||| || ||||| |||||||| | |||| |||||| Sbjct 41344 GACACGGAAGAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTCAAAGTC 41403 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584 ||| || | ||||| ||||||| |||| || |||| Sbjct 41404 TCGGTCATGGATAATGGCCGAGTTCAGTTGGTCTTTAT 41441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718247054412080