Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2405 161 1e-34 seq918 125 1e-23 >seq2405 Length=255098 Score = 161 bits (178), Expect = 1e-34 Identities = 312/456 (68%), Gaps = 7/456 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || ||| || || || ||||| ||| ||||| | |||||| | |||||||| | Sbjct 48840 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 48781 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | | || || ||||| || |||||||| || ||||| || || || ||| || || | Sbjct 48780 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 48721 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACTG 42235 | ||||||||||| || || || ||||| || | ||| | ||| || || |||| Sbjct 48720 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 48661 Query 42236 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 || || ||| || | |||||| |||||||| | ||||| || || || || | Sbjct 48660 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 48601 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | ||| | || | || || || | || || | || || || || | || Sbjct 48600 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 48541 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 |||| ||||| || ||||| |||||||| || || || |||||||| || | |||| Sbjct 48540 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 48481 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTC--AGCTAAATTTTCGTTCACTATTCCGTC 42471 | | ||||||||||| | | ||| |||| ||| | || |||||||| || || || Sbjct 48480 CAGGCACCTGTACTTCATTGCTAAA--GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 48423 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 |||||| ||||| || ||||| || || || || || Sbjct 48422 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAA 48387 >seq918 Length=42645 Score = 125 bits (138), Expect = 1e-23 Identities = 469/728 (64%), Gaps = 8/728 (1%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||||| |||||||| ||| | || | || ||| || || ||||| | ||| Sbjct 40718 TCGAACTCCTCTCCCCA-GCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACT 40776 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||||| |||| | | || || ||||| || ||||| || | ||| ||||| ||| | Sbjct 40777 CCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGC-ATAGA 40835 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | | || | | | ||| |||||| || ||||| ||||| | |||| | | Sbjct 40836 ACAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAA 40895 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 | ||||| ||||||||||||| || || || | |||| ||||| ||| | Sbjct 40896 ACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCAC 40955 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | ||| | || || | ||| | |||| || ||| || || || || |||| Sbjct 40956 CCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGG 41015 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAG 72299 | | || || || ||| ||| ||||| | | || || || | ||| | |||| Sbjct 41016 ACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT-- 41073 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 || || || |||||| || ||||| | || || |||| | || ||||| ||||| Sbjct 41074 GCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCC 41133 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || ||| |||||| |||| | | || || ||||| ||| |||| || Sbjct 41134 TTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGT 41193 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 || ||||| || | || || | ||||| || || |||||| |||| || | ||| Sbjct 41194 ACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTA 41253 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 ||||||| || | | || | | | || || |||| || || ||||| | ||| Sbjct 41254 AGTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCAT 41313 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 ||||| || | ||| || | ||| | | || | || | |||| || Sbjct 41314 CTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGT 41373 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 ||||| |||||||| | |||| ||||||||| || | ||||| |||| || |||| Sbjct 41374 CTTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGCCGAGTTCAGTTG 41433 Query 72660 ATCCTTAT 72667 || |||| Sbjct 41434 GTCTTTAT 41441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671118881260720