Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq1445 98.7 5e-16 >seq1445 Length=122836 Score = 98.7 bits (108), Expect = 5e-16 Identities = 320/493 (65%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 66845 ATCGACGCTGAGCACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGAC 66904 ||||| ||||| ||| || | ||| | | |||||||||||| | ||||| ||| |||| Sbjct 38254 ATCGATGCTGAACACGCCATTGACGCTCACTACGCCAAGGCGTTGGGTGTCGACATCGAT 38195 Query 66905 AACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTC 66964 | || || ||||| || | |||||| | || |||| |||| || || Sbjct 38194 GAGCTGTACGTTTCCCAGCCCGATTCGGGCGAGGAAGCTTTGGAAATCGCCGATACTCTG 38135 Query 66965 GTCAAGTCTGGCGAGCTGTCCATC--GTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGC 67022 || ||| || | ||||| | | ||||| | || ||| || || || || |||| Sbjct 38134 ATCCGGTCCGGTG--CTGTCGACCTTGTCGTGCTGGATAGTGTAGCAGCTCTCGTACCGC 38077 Query 67023 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 67082 | || ||||| || || || || || ||| || | | ||||| |||||||||||| Sbjct 38076 GTGCTGAGCTGGAGGGTGAAATGGGTGACCAGCAGATTGCACTGCAAGCGCGCCTCATGA 38017 Query 67083 CGCAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAAC---ACGCTGACGCTCT 67139 || || ||||||||||||| || | | |||| ||||| || | | ||| Sbjct 38016 GTCAAGCTTTGCGCAAGCTCACAGGTTCGCTGTCCAAGTCCAACTGTACCATCA---TCT 37960 Query 67140 GGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCA 67199 | |||||| | ||| ||||| | |||| | || || | |||| || Sbjct 37959 TCCTGAACCAGATCCGCCAGAAGGTTGGCA---TTATCTTTGGATCTCCTGAGGTGACAT 37903 Query 67200 CGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCA 67259 | || |||| ||||| | | |||||| || || || | ||| |||| |||| | Sbjct 37902 CTGGTGGAACAGCTTTACGCTACTACGCGTCCGTACGGCTAGATATCCGCCGCAAAACGG 37843 Query 67260 CCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACA 67319 || || || ||||| ||| ||| |||||| || || || || | ||||||| Sbjct 37842 CCATCAAAGAGGGCGACCAGGTTGTAGGCAACGAGACGGTAGTCAAGGTGGCTAAGAACA 37783 Query 67320 AGCTGGCCCCGCC 67332 |||||||| |||| Sbjct 37782 AGCTGGCCTCGCC 37770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242847231393464