Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1680 107 1e-18 >seq1680 Length=186158 Score = 107 bits (118), Expect = 1e-18 Identities = 327/496 (66%), Gaps = 21/496 (4%) Strand=Plus/Minus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| |||| ||| | |||||| ||||| || || || | | ||||| Sbjct 180721 AGCTGCTTCTGAAGCGGCTCTATGTGGTTCAGGTATACGTGTGCATCACCAATAATGTGG 180662 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTA-CGTGAGGAGAAAGTA 25531 | ||| || || | || | || | || | |||| || || ||| || || || Sbjct 180661 ATAAATTCGCCAGATTTCAAACCAGCCACTTGGGCCA-CAAGTCGCGTCAGTAGCGCATA 180603 Query 25532 GCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGAC 25591 ||||||||||| || || || |||| |||||||| | || | |||||| | || | Sbjct 180602 ACTGGCGATGTTGAACGGCACGCCGAGGCCCATGTCAGCT-GAACGCTGGTACATTTGGC 180544 Query 25592 ACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTA 25651 |||| | || | || ||||||||||||||| | ||| || || || || || | Sbjct 180543 ACGACAATTCGCCATCCGCCACGTAAAACTGACAAAACATGTGACATGGTGGCAGCGCCA 180484 Query 25652 TAAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGG 25707 | | || || ||| || ||||| || ||| | || | | ||| ||| Sbjct 180483 T----CTCATTGAGATCTGCCGGATTCCACGCAGACAACACAATCCGACGGTCGGTCGGG 180428 Query 25708 TT-GTCCCTGATAAG---ATCCGCGGTGTTTTGCA-GCTGATCCACCCCCATCCCCGAGT 25762 || || | || | ||| | | ||| | ||||||||||| || | || Sbjct 180427 TTCGTGCGCAATTTGTGGATCACC-----TCAGCAAGTTGATCCACCCCTTGTCCAGTGT 180373 Query 25763 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCG 25822 ||||||| ||| |||||||||| ||||| || | | ||||||||| || || || | Sbjct 180372 AGTCTGCATGCATATCCGTGTACTTGGCTCCAAAGTGACGCCACTGGAATCCATAAACTG 180313 Query 25823 GTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAAC 25882 |||| |||||||| ||||||| || | || | | |||||| | |||| || | Sbjct 180312 GTCCCAGGTCTCCTACTTCCCTTGACTGCAGTCCACAACTGTCCAAATACTCTCGCGATC 180253 Query 25883 CATTGGCGTCCCAGAT 25898 ||||| | |||||||| Sbjct 180252 CATTGCCATCCCAGAT 180237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340127559775806