Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2405 161 1e-34 seq918 118 1e-21 >seq2405 Length=255098 Score = 161 bits (178), Expect = 1e-34 Identities = 403/608 (66%), Gaps = 7/608 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || ||| || || || ||| | ||| || || | |||||| | |||||||| | Sbjct 48840 ACAACAGACAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGA 48781 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | | || || ||||| || |||||||| || ||||| || ||||| ||| || || | Sbjct 48780 AGCTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCG 48721 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTG 32831 | ||||| ||||| || || || ||||| || | ||| | ||| || || | || Sbjct 48720 AGAAGAAGATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTT 48661 Query 32832 TCATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || || | || || | |||||| |||||||| | ||||| || || ||||| | Sbjct 48660 TCGGGTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAA 48601 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | ||| | || | || || || | || || | || || ||||| | || Sbjct 48600 TTGCACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCG 48541 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 |||| || || || ||||| |||||||| ||||| || ||||||||||| | ||||| Sbjct 48540 AGTACACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCT 48481 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCGTC 33067 | | | ||||||||| | | ||| |||| || | || || ||||| || || || Sbjct 48480 CAGGCACCTGTACTTCATTGCTAAA--GTTCATAGCCAGGTTCTCGTTCACGATGCCATC 48423 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33127 |||||| ||||| || ||||| || || || || || | |||| ||| || || Sbjct 48422 ACTGGCGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTT 48363 Query 33128 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 33187 ||| || |||| || | | |||| |||||| | ||||| || ||||| Sbjct 48362 TCCCCAGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTC 48303 Query 33188 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 33247 ||||| || ||||| | ||| | ||| || | || || || || | || || | || Sbjct 48302 CGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAATAGCACGAAGCGGTT 48243 Query 33248 TGGATTTT 33255 || |||| Sbjct 48242 CGGGTTTT 48235 >seq918 Length=42645 Score = 118 bits (130), Expect = 1e-21 Identities = 465/727 (64%), Gaps = 6/727 (1%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| |||||||| | || ||| || ||| || | ||||| | ||| | Sbjct 40718 TCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTC 40777 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111 |||| || | ||| ||| || ||||| || ||||| || | ||| ||||| ||| || Sbjct 40778 CACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGC-ATAGAA 40836 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | || | | | || |||||| || ||||| ||||| | |||| | | Sbjct 40837 CAAGTCACGTGCACGGTGCAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAA 40896 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||||| ||||||||||||| || || || | ||| ||||| ||| || Sbjct 40897 CACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACC 40956 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | ||| | || || | ||| | |||| || ||| || || || || ||||| Sbjct 40957 CTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGA 41016 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAGA 63349 | || || || || ||| ||||| | | || || || | | | | |||| Sbjct 41017 CGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGAT--G 41074 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || || |||||| || ||||| | || || |||| | || ||||| ||||| Sbjct 41075 CCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCT 41134 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || ||| |||||| |||| | | || || ||||| ||| |||| || Sbjct 41135 TCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTA 41194 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || ||||| || | || || | ||||| || || |||||| || | || | ||| Sbjct 41195 CCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAA 41254 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 ||||||| || | | || | | | || || |||| || || ||||| | ||| Sbjct 41255 GTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCCTAGAGCCACGCGCATGATCATC 41314 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 ||||| || | ||| || | ||| || | || | || | |||| || Sbjct 41315 TGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAAGAGATATCCCCTCTCCAGTGTC 41374 Query 63650 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63709 ||||| |||||||| | |||| ||||||||| || | ||||| ||||||| |||| Sbjct 41375 TTAAAGCCAAAATAATCGTATTCAAAGTCTCGGTCATGGATAATGGCCGAGTTCAGTTGG 41434 Query 63710 TCCTTAT 63716 || |||| Sbjct 41435 TCTTTAT 41441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633612816791200