Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2405 120 3e-22 >seq2405 Length=255098 Score = 120 bits (132), Expect = 3e-22 Identities = 394/604 (65%), Gaps = 10/604 (2%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || |||||||| || || | |||||| || || || | ||| ||| ||| | | | Sbjct 48832 CAAGCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGA 48773 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaaaaaaa 93210 || || | || || || ||||||||||| || || || |||||| | || || || || Sbjct 48772 CCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGA-GCAAAAGGAGCCCGAGAAGAA 48714 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA--TTACTG 93268 || || ||||| ||||||||||||| || ||| || | | || ||| || | | Sbjct 48713 GATTCCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTA---TGAGGACACTTTCGG 48657 Query 93269 CT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | | |||| ||| |||||| || || || | | ||| || | || || || || Sbjct 48656 GTCGCACCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGC 48597 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | |||| || ||| | | || ||||| || || || | ||| || || Sbjct 48596 ACGCAGCAGGTGGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGCGAGTA 48537 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 || || || |||| ||||| || ||||||||||| |||||||| || | ||| || | Sbjct 48536 CACCTCTGAGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCAGG 48477 Query 93448 GATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | ||| ||||| ||| ||| | || | || || || || || || ||||| | Sbjct 48476 CACCTGTACTTCATTGCTAAAGT-TCATAGCCAGGTTCTCGTTCACGATGCCATCACTGG 48418 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | ||||| || ||||| | ||||| || || || ||| | ||| | || || ||| Sbjct 48417 CGGCAAAGAAGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTTCCCC 48358 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 | || || || | | | || | ||||| ||||||| || || || || | Sbjct 48357 AGTCCTTGAGGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCT 48298 Query 93627 TTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGT 93686 | |||||||| | ||| | ||| || | || || || |||| || || || || |||| Sbjct 48297 TCTTGTACATCTGCCACACGTCGTGCTCCTGGATGGGGAATAGCACGAAGCGGTTCGGGT 48238 Query 93687 TATC 93690 | || Sbjct 48237 TTTC 48234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556843941039280