Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2405 221 2e-52 seq1371 183 6e-41 seq2420 102 2e-16 seq1560 84.2 4e-11 seq1040 84.2 4e-11 >seq2405 Length=255098 Score = 221 bits (244), Expect = 2e-52 Identities = 576/862 (67%), Gaps = 31/862 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| |||| |||||||| |||||||| | ||||| |||| || ||||| || Sbjct 49099 TCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATCCAGTCAAACGGGTTCTTG 49040 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||| ||||| | ||| | | |||||||||||| ||||| | Sbjct 49039 ACGTTGTAGATCTTGGACACACCAAGCGAATAC-AGCAGGCGGTCTGCCACGAACTCAAT 48981 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGA---ATTGCCTCAC 251737 ||||| | ||| || | ||||||||||| |||| | || ||| | | ||||| Sbjct 48980 GTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACTGGGAGCGAGTCGCTCAC 48921 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC---CTGTGCCA 251794 | || || | |||| | || || || | ||| | | ||| ||| || Sbjct 48920 A----AACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGCACACGCTGCTCCG 48865 Query 251795 GAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCT 251854 | ||||||| || ||||||| ||||||| || |||| | | ||||| ||| | Sbjct 48864 G---CAGCTTGGTCACCAGCTTCGAGTACAACAGACAAGCAAAGTCTGTGTGCATACCTT 48808 Query 251855 CGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGA 251914 | || ||||| |||| ||||||||| | | ||| |||||||| | ||||| ||| ||| Sbjct 48807 CATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAGACCACGCTTCTTGA 48748 Query 251915 GCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 |||||||||| | ||||||||| || ||||| | | ||||| ||| | |||| | Sbjct 48747 GCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCACAGCTGCAAATGCCA 48688 Query 251975 CAAGGCGCTCAGCAAACG-----ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGC 252029 ||| ||||| | | | |||| || | || | ||| | ||||| || Sbjct 48687 GAAGACGCTCCGGGTATGAGGACACTT-TCGGGTCGCACCATCTT-AGCGCCCAACTCGC 48630 Query 252030 CTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC 252089 |||||| || ||||| || || |||||| | || || | ||| || | Sbjct 48629 CTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGTGGTCCTTCTCCACAGC 48570 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||||| |||| || |||| || || ||||||| ||| || |||||| || || Sbjct 48569 GTCCTTGATGTACGTGTCAATGAGCAGCGAGTACACCTCTGAGTGGATGTTCTCAATGGC 48510 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 || ||| | | ||||| ||| || ||| | ||||| || |||||| | Sbjct 48509 AATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGTACTTCATTGCTAAAGTTCAT 48450 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAA-GCCAAGAATGGTCTTGA 252268 || | |||||| |||| |||||||| ||| | |||||||| |||||| | | ||||| Sbjct 48449 AGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGAAGGCCAAG-ACGTGCTTGA 48391 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||||||||| | ||| |||| || | |||||| | ||| || || Sbjct 48390 TGAAGTGACGCTCGTTGTCTGTGAG---GTTTCCCCAGTCCTTGAGGTCGTGTACCAAGT 48334 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCA 252387 | |||||| | |||||||| ||| | |||||||||||||||| ||| |||| || Sbjct 48333 CCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACATCTGC-CACACGTCG 48275 Query 252388 GGGTACTTGATTGGGAA-AGCA 252408 | | || ||| ||||| |||| Sbjct 48274 TGCTCCTGGATGGGGAATAGCA 48253 >seq1371 Length=52859 Score = 183 bits (202), Expect = 6e-41 Identities = 662/1020 (65%), Gaps = 33/1020 (3%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 ||| || || ||||||| ||||||||||| || ||||| | ||||||||| ||| | Sbjct 15497 GGACCTTTGCAACTGTGAGTTCTCGCTCGCTTACGGTGGTATGATTCTGCTGAACAACGC 15438 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| || | | ||||||||| |||| || ||||| ||||||||| || ||||| Sbjct 15437 CCGTCTTCGCCTAAAGCGTGGCCACCGTTACGGTCTGTGCGGTCCCAACGGTTGCGGTAA 15378 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC-TAACGCATCTG 279528 | || || |||||||||||| | ||||| ||||| || || || || | ||| | | Sbjct 15377 GTCTACGCTTATGCGCGCCATTTCCAACGGCCAGCTTGACGGCTTCCCGTCGCGCGAC-G 15319 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGT 279588 || | | ||| |||| || |||||| || | | | || | || | || Sbjct 15318 AGCTGAAGACTGTGTTCGTCGAGCACAACTTGCAAGCTTCGGAGGCCGAGCTGTCCGTTG 15259 Query 279589 TCGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCC 279648 | |||||| | || || | | | | ||| | | ||| || |||| || | Sbjct 15258 TGGACTTCATCCTGTTCGATGAGGACCTGAAGGACA-CTCCTCGCC--AGGAGGTCGTTG 15202 Query 279649 AGAAACTGGAGGCCAATGGTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTG 279707 | | || | | ||| || | || |||| | | | || || | || Sbjct 15201 ACACGCTTACCGGCG-TGGACTTCACCGCTGAGATGCAAGCCCAGGCTGTGGGCACCCTT 15143 Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 |||||||||||||||||||| |||| || | || || || || | | ||||| | Sbjct 15142 TCGGGTGGTTGGAAGATGAAACTGGAGCTGGCCCGTGCTATGCTTCAGAAGGCCGACATT 15083 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 || || ||||||||||| || |||||| |||| || ||||| || ||||| | | | Sbjct 15082 CTGCTTCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTTGCGTGGCTCGAGAAC 15023 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||||| || | ||| ||| || | | |||| || || |||||||| ||||||| Sbjct 15022 TACCTGACGAACCTGCCGAACGTGACGAGCATCATGGTGTCCCACGACTCCAGCTTCCTT 14963 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCAC 279944 || | || || || |||||||||||| ||| | || |||||| ||| |||| Sbjct 14962 GACACGGTCTGTACTAACATCATTCACTACGAGACCCGTAAGCTGAAGATCTACAAG--- 14906 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004 |||||||| || ||||||| | |||||||| ||||||||||| ||| Sbjct 14905 ---GGCAACCTTTCCAAGTTCGTGGAGGTGAAGCCTGAGGCCAAGGCCTACTATGAGCTG 14849 Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATC 280063 ||| || ||| || | ||||| ||||| || || || | | |||| | | | Sbjct 14848 GAGGCTGCTACCTTCAGATTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAAC 14789 Query 280064 AAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATC---CCAATGGCCC 280120 || || || | |||| | ||| | || | | || | | ||||| Sbjct 14788 AAGGGTAAGC-CCATCA------TTCGTCTGACCAACTGTACCTACCAGTACCCTGGCCG 14736 Query 280121 CAAC--ATCTTC-AGCAGTGTCAACTCG--CAGGT-TTCTATGAACTCACGGATTGGTGT 280174 || | | || | || || ||| | || || || || || |||| || Sbjct 14735 TGACAAACCGTCGATCAACAACATTTCGGTGACGTGCGCTCTGTCATCGCGTATTGCCGT 14676 Query 280175 CATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA 280234 |||| ||||| ||||| |||||||| || || ||||| | ||||| || ||| | Sbjct 14675 GCTTGGCCCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTTGA 14616 Query 280235 GGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 |||| | || | || |||||||| || |||||| | ||||||||||||||||| Sbjct 14615 ACCCACCGTCGGTACGGTATGGAAGCACCCTTCCATGCGTTTCGCTTACGTCGCTCAGCA 14556 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||| ||||| || | ||||| ||| |||| | ||| |||||||||||||| Sbjct 14555 CGCTTTCCATCACATTGAAGAGCACCTCGACGAGACTGCCAACGCCTACATTCAGTGGCG 14496 >seq2420 Length=34885 Score = 102 bits (112), Expect = 2e-16 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 4133 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAG 4192 Query 142563 CCCCAC 142568 |||||| Sbjct 4193 CCCCAC 4198 >seq1560 Length=1625 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 394 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 335 Query 142565 CCAC 142568 |||| Sbjct 334 CCAC 331 >seq1040 Length=4212 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 3723 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 3664 Query 142565 CCAC 142568 |||| Sbjct 3663 CCAC 3660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027804904296902