Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq918 156 5e-33 seq2405 150 2e-31 seq321 84.2 3e-11 >seq918 Length=42645 Score = 156 bits (172), Expect = 5e-33 Identities = 467/714 (65%), Gaps = 15/714 (2%) Strand=Plus/Plus Query 114550 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 114609 ||| ||||| | ||||| ||||| ||||| ||| || |||||||| | |||| | Sbjct 40552 AATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAA 40611 Query 114610 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG-GCA 114668 ||| |||||||| | || | | |||||||| ||| | || | || ||| Sbjct 40612 AGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACA-----GCTGTTGAGCA 40666 Query 114669 CAG--TGGCGTT--GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCT 114724 | || | | ||| || || || ||||||||| | || | || ||||| Sbjct 40667 TTGATTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCC 40726 Query 114725 TCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 114784 || ||| | ||| | || || || |||| | || ||||| | | ||| | ||| Sbjct 40727 TCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCA 40786 Query 114785 CCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGA 114844 |||| |||||||||||||| || || || | ||| ||||| |||| | || || Sbjct 40787 TTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGT 40846 Query 114845 -CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 || | || || | | || || || |||| ||||| || || | | ||| || Sbjct 40847 GCACGGTGCAGCT-CGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGC 40905 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTAC 114960 ||||||||||||||| || | ||| | ||| ||||| || || ||| |||||| || Sbjct 40906 GTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCAC 40965 Query 114961 ATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 115020 || | || || | ||||| || || ||||| || ||||| || | || ||| || Sbjct 40966 GTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTT 41025 Query 115021 TGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080 || || || || ||| | |||| || | || || || ||||| || || Sbjct 41026 CGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCC 41085 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 ||||||||| ||||| ||| |||| | ||| || | || || || || || ||||| Sbjct 41086 TGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTC 41145 Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200 | ||| | || | | |||||| |||| |||||| | ||| |||||||| ||||| Sbjct 41146 ATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAA 41205 Query 115201 GAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 115254 || || || || |||||| |||| | ||| ||||| ||||| ||||| Sbjct 41206 CAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 41259 >seq2405 Length=255098 Score = 150 bits (166), Expect = 2e-31 Identities = 352/527 (67%), Gaps = 12/527 (2%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | | ||| | Sbjct 49124 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCAT 49065 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | ||||| |||||||| ||| | || | | ||| |||| | | || Sbjct 49064 GTCCATCCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAG 49005 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 || || || | ||| |||||||||||| |||| | | |||||||| ||||| || Sbjct 49004 CAGGCGGTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAG 48945 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | |||||||| ||| | ||| | | || || | ||| || || || | || Sbjct 48944 CTCCACTGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAAT 48885 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG---- 126047 |||| | | | || || ||| || ||| |||| | || | Sbjct 48884 CTCGTGCACACGCTGCTCC---GGCAGCTTGGTCACCAGCTTC--GAGTACAACAGACAA 48830 Query 126048 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 |||| ||| ||| | ||| || ||||| ||||| || || ||||||| ||| || Sbjct 48829 GCAAAGTCTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCA 48770 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| |||||||| | |||||| || | ||||| || ||||||||||||||| Sbjct 48769 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATT 48710 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTT-GTGTCAAA 126225 ||||||||| || || || | |||||||| | | ||| | ||||| | ||| | Sbjct 48709 CCCTCCACAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCA 48651 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 126272 ||| | | |||||| |||||| || | |||||||| ||||| Sbjct 48650 CCATCTTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCT 48604 >seq321 Length=97162 Score = 84.2 bits (92), Expect = 3e-11 Identities = 261/394 (66%), Gaps = 24/394 (6%) Strand=Plus/Minus Query 172580 AGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAACCA 172639 || || || |||||||||| |||||| | ||| | | ||||||||||| || ||| Sbjct 24660 AGTAGTGACGGCCAGAAGTGGTGGATGAGATTGATCACCAGACCCTTAATATGACTGCCA 24601 Query 172640 TCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGC---TCGGAAACATC 172695 |||| ||| ||| | ||| ||||| || | ||||| || |||| ||| || Sbjct 24600 TCGTGATCTTGATCTGCCATGATCATCAGGTGGCCATACCGCAAGCCTTTCGTGGAC--- 24544 Query 172696 TTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATT--GAA-CTCTTG 172752 | |||| | || | | || || |||| |||||| | || ||| ||||| Sbjct 24543 -TCATACATTTGGCCATACTTGAGTCC-AAGAA--TCTTGACCACGTTTTGAATCTCTTC 24488 Query 172753 GTTTGATGTGAGTTGCGCCACTGAA--GCATCGCGGACATTTTTACACTTCCCACGGAGA 172810 |||| || ||| | | || || || || |||||| ||| ||||| || Sbjct 24487 GTTTTTCAGGATTTGGG--AGTGGCTTGCCTCACGCACATTTAGCATCTTACCACGCAGC 24430 Query 172811 GGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTC 172870 || || |||||||||| || | ||||| || | ||||||| | || || | || || Sbjct 24429 GGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCACAGCTACTGTTTTA 24370 Query 172871 GCGGAATCACCCTCCGTCACGATGAGCGTACA---CTTTCCAGATTGTGCCGTCCCCGCC 172927 || ||||||||||| || | ||| || || || ||| || | || || || || Sbjct 24369 GCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTTCGCAGTGCCGGCG 24313 Query 172928 TTGTTCGCATCGTCCAACTTGGGAATACCAGTAA 172961 | ||| |||||||| | ||| |||||||| |||| Sbjct 24312 TGGTTGGCATCGTCTAGCTTTGGAATACCCGTAA 24279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597335515119760