Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq918 307 1e-78 >seq918 Length=42645 Score = 307 bits (340), Expect = 1e-78 Identities = 1085/1689 (64%), Gaps = 39/1689 (2%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || |||||||| || || ||||| ||||| |||||||||| ||| || Sbjct 41220 GCCACCCCCACGCTGTTCAATGCTGGTACCCCACGTCCACAATTGTCTTCGTGCTTCTTG 41161 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||| || || |||| |||| || || | |||||| | Sbjct 41160 TTGGCCATGCAGGATGACTCTATTGAAGGCATTTATGACACTCTGAAACAGTGTGCGTGC 41101 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || |||||| | ||| || | || || | | Sbjct 41100 ATCTCCAAGTGGGCAGGAGGCATTGGCATCAGTATGCACAACATCCGAGCTACTAACAGC 41041 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| || || ||| | ||||||||| || |||| ||||| || || || ||| Sbjct 41040 TACATCCGCGGCACGAACGGCTCGTCCAACGGCATCATCCCCATGCTGCGAGTGTTTAAC 40981 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | |||| || ||||||||||||||||| || | | ||||| || || ||| | ||| Sbjct 40980 GATACGGCACGTTACGTGGACCAGGGTGGAGGTAAACGCAAGGGATCATTTGCGATTTAT 40921 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || || || |||||||| || ||| | ||| | || ||||| |||||||| || ||| Sbjct 40920 CTGGAACCGTGGCACGCTGATGTGTTTGAGTTCTTGGATCTGCGCAAGAACCATGGTAAC 40861 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||| | ||||| ||||| |||||||| || || || ||||| Sbjct 40860 GAGCTGCACCGTGCACGTGACTTGTTCTATGCTCTGTGGGTGCCGGATCTATTCATGAAG 40801 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || ||| || | |||||| | || |||||||| || |||||| |||| | Sbjct 40800 CGTGTGGAGGCCAATGGCAAGTGGAGTTTGTTCTGTCCCAACGAGGCTCCCGGTCTGTAC 40741 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGAC-TTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 || || ||| | | || |||| ||| || ||||| | ||| || Sbjct 40740 GAGTGCTGGGGAGAG-GAGTTCGAGACGCTGTTTGAGAAGTACGAGCGTGAAGGCCGCGC 40682 Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490 | | ||| || ||||| |||||||| || |||||| ||| | ||||| Sbjct 40681 CCGCAAGACAATCAATGCTCAACAGCTGTGGTTCGCTATTCTGGACGCGCAGATTGAGAC 40622 Query 94491 GGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 ||| ||| | ||| || | ||||||| | | |||| |||||| || |||||| |||| Sbjct 40621 GGGCGTGCCTTTCATGTTATACAAGGACGCCGCCAACCGCAAGTCTAATCAGCAGAACCT 40562 Query 94551 CGGGGTGAT---CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| ||| | |||| || ||||| || | | |||||||| || || || Sbjct 40561 CGGCACGATTCGCTCGAGC---AACTTGTGCTGTGAAGTGATGGAGTATACGTCGCCTGA 40505 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 ||| | || ||||| ||| ||| ||| | || ||| ||||| |||| | Sbjct 40504 TGAGGTGGCCGTGTGCAACTTGGCGTCCGTGGCGCTCCCCAAGTTCGT-TGAGAACGC-- 40448 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGTC- 94725 ||| | | || | || |||| | ||| | || |||| || || Sbjct 40447 --CGTATTCAACTAC----------AAGAAGCTGTATGA---TGTCGTCAAGG-TGATCA 40404 Query 94726 --TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 |||||||||| ||| |||||| |||| ||||||||| ||||| || | Sbjct 40403 CACGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTTATTGAGGCTCGCAATT 40344 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || | || || || || ||||| | |||||||| | | Sbjct 40343 CCAACATGCGTCACCGTCCTGTTGGTATTGGTGTGCAGGGCCTTGCGGACGCTTTCATCC 40284 Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAA 94903 | ||| | | | ||| | || ||| | | || ||| || ||||| | Sbjct 40283 TCATGGACTTTGCGTTCGAGAGTCCGGAGGCGCGTGAGCTCAACAAGAATATCTTCGAGA 40224 Query 94904 GCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCAC 94963 ||| || |||| | ||| | || | | |||||| |||| || || Sbjct 40223 CCATCTACTACGCTTCTATGGAGACGTCAATGGAACTGGCCA---CGGAATTGGGCCCGT 40167 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGGT 95022 |||| | |||| || ||| ||| | | |||| || || |||||||| | ||| Sbjct 40166 ACGAGACTTTCCAGGGTTCG-CCTGCCAGCAAGGGTATCTTCCAGTTCGATATGTGGAAC 40108 Query 95023 GTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACAC 95079 || | || |||| ||||||| ||||||| || || | | || |||| || Sbjct 40107 GTCACGCCTTCCTCCGGTCTGTGGGACTGGGCTGCGCTTAAGGAGAAGGTGGTCAAGAAC 40048 Query 95080 GGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTT 95139 || || || |||| || || || || ||||| ||||| || ||||| |||||||| Sbjct 40047 GGCCTGCGCAATTCGCTCCTGGTCGCGCCGATGCCGACGGCGTCTACGGCACAGATCCTC 39988 Query 95140 GGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCC 95199 || || |||||||| ||||||| |||||||| ||| |||||||| | || ||||| || Sbjct 39987 GGTAATAACGAGTCTATCGAACCGTTCACCTCTAACATGTACAACCGCCGCGTGCTTGCG 39928 Query 95200 GGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG 95259 || || || || || | |||||| |||| | || |||| |||||||||||| Sbjct 39927 GGAGAGTTTACCATCGTGAACAAGTACCTGATGAATGAGCTGATTGAGCTGGGTGTGTGG 39868 Query 95260 GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAA 95319 | | |||| ||||| | | | | ||| || || ||||| | Sbjct 39867 GCTCCTGAGGTGCGTAACCAGATCTTGAATGACGGCGGTTCGGTGCAGAATGTGAGCTCC 39808 Query 95320 ATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATA 95379 || ||||| ||||||||| | |||||||| |||||||||||| |||| ||| Sbjct 39807 ATTCCGGACCACATCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGTCGATT 39748 Query 95380 CTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNN 95439 || |||| | || | || || ||| |||||| ||||| Sbjct 39747 CTGGACCTGTCTGCGGATCGTGGTGCCTACATCTGTCAGAGTCAGTCGCTGAACATTCAC 39688 Query 95440 ATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGT 95499 || ||||| || | | || | || || ||| || |||| ||||| ||||| Sbjct 39687 ATCGCCGAACCGACAAAAAGCAAGCTTACATCGATGCACTTTTACGCGTGGAAGAAGGGG 39628 Query 95500 CTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTCGCC 95559 |||||||| || ||||| || |||| | || || || ||| |||| |||||| || Sbjct 39627 CTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCTGACGCCATCCAGTTCACC 39568 Query 95560 CTAGAAAAG 95568 | || ||| Sbjct 39567 GTGGACAAG 39559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494708222255120