Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1582 104 2e-16 seq609 87.8 1e-11 seq2076 86.0 5e-11 >seq1582 Length=82899 Score = 104 bits (114), Expect = 2e-16 Identities = 434/675 (64%), Gaps = 20/675 (3%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||||||||| || || ||||| || |||| | |||| |||| || || | ||| Sbjct 5523 ACAAGACGATTGTCGAAGTCTTCGCCACCCAGATGCGTATCACCTGCAGTGGCCTTCACT 5582 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | ||| || |||| | || |||| || ||| ||| || || |||| || Sbjct 5583 TCGAAGATTCCTTCCTCAATACTCAGCAGAGAGACGTCAAAGGTGCCGCCGCCCAGGTCG 5642 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 ||||| || ||||| || | | || || || ||||| || || | |||||| Sbjct 5643 AAAATGAGCACATTGTGCTCCC---CACGCTTCTTGTCCAGACCGTATGCGATGGCAGCA 5699 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || ||||||||||| ||||| | || || || | ||||| || || ||||| || Sbjct 5700 GCCGTTGGTTCATTGATAATGCGCAGCACGTTCAATCCAGCGATGGCGCCGGCATCCTTC 5759 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || || || | || || ||||| ||||| || || || || | || |||| | ||| Sbjct 5760 GTCGCCTGGCGCTGCGAGTCGTTGAAATACGCCGGGACGGTCACGACCGCATTCTTCACT 5819 Query 518315 TCTTTACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | || || |||| ||||| ||| | ||| || | | | ||| || || | Sbjct 5820 TGCTTGCC--GATAAACGCTTCGGCCACCTCACGCATCTTGATCAGCACCATGGACGAGA 5877 Query 518373 TTTGTTCTGG--GGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTT 518429 | | || || |||| | ||| || || |||| || || | | | || | Sbjct 5878 TCTCCTCCGGTTGGAACGT--CTTCGACTCGCCCTTGAACTG-CACCACCACCTGAGGCT 5934 Query 518430 TATTACC---AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTT- 518485 |||| | | || | || || || ||||| | ||| ||||| || || ||||| Sbjct 5935 TATTGTCCGGACCACGCACCACCTTGAACGGCCAATGTTTGATATCCGACTG--CACTTC 5992 Query 518486 -TGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATT 518544 ||| || | | ||| || | || || || || || | || ||| | ||| Sbjct 5993 CAAGTCCGAGAACTTGCGACCGATCAGACGCTTGGCGTCGAACACCGTGTTGTGCGCATT 6052 Query 518545 AATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAAC 518604 || || | || | ||||| || ||||| |||||| | || || || || || | ||| Sbjct 6053 CATGGCCACCTGGTTCTTGGCGGCGTCTCCGATCAGACGCTCCGTGTCCGTGAAGGCAAC 6112 Query 518605 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 518664 || || || ||||| || |||||||| ||||| || || ||||| || | || || Sbjct 6113 GTACGAAGGGGTTGTACGGTTACCTTGGTCATTGGCGATGATTTCCACACGGTCGTTCTG 6172 Query 518665 CCATACACCTACACA 518679 ||| ||||| || || Sbjct 6173 CCACACACCCACGCA 6187 >seq609 Length=67637 Score = 87.8 bits (96), Expect = 1e-11 Identities = 201/303 (66%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| ||||| | || | || ||||| || | ||| | || Sbjct 61559 TCAAAGTCCTCACCGCCCAAGTGCGTGTCACCGTTGGTAGCAAGCACCTCGAACACACCG 61500 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | |||| || || ||| || ||||| ||| || ||||| | ||||| | || ||| Sbjct 61499 CCGTCAATAGCCAGAAGCGTCACATCGAAGGTACCGCCACCAAGGTCAAAGACCAGCACA 61440 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||| | || | | || || |||| ||| || |||| ||||||||||| || || Sbjct 61439 TTCTTCTCGCCCTGTGCCTTCTTGTCAATACCGTAAGCAATGGCAGCAGCAGTAGGCTCG 61380 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||| || | | ||| | ||||| ||||| | || ||||| || || || || | Sbjct 61379 TTAATGATACGCTGCACAGTCAGACCGGCAATGGTACCGGCATCCTTGGTAGCCTGACGC 61320 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || | ||||| || || ||||| || |||| || || ||| ||||| ||||| Sbjct 61319 TGAGCGTCGTTGAAGTAAGCAGGCACTGTAACCACAGCGTCAAACACTTCACGGCCAATG 61260 Query 518327 TAA 518329 ||| Sbjct 61259 TAA 61257 >seq2076 Length=85087 Score = 86.0 bits (94), Expect = 5e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 |||||||| ||||||||| | || || | ||||| || ||||||||| | || || ||| Sbjct 22071 GGTAAAGAGGGTCGTATTCGTGGTAACCTAATGGGCAAGCGTGTCGATTTTTCGGCGCGT 22130 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCC 668964 || || || || |||| || || |||||| | || ||||||||||||| Sbjct 22131 ACTGTCATCACCGCTGACCCTAACATTGCTATTGATCAAGTTGGTGTTCC 22180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780702212381932