Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq918 156 5e-33 seq2405 120 4e-22 seq2271 87.8 2e-12 seq321 82.4 9e-11 >seq918 Length=42645 Score = 156 bits (172), Expect = 5e-33 Identities = 614/954 (64%), Gaps = 19/954 (2%) Strand=Plus/Plus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || || || | || ||||| ||||| || ||| |||||| || |||| Sbjct 40461 ACTTGGGGAGCGCCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACT 40520 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTT---AATCGTCCCCAAATTCTTTTGGTTAC 106568 | | | ||| ||||||||| ||| |||||| || | |||| || ||| Sbjct 40521 CCATCACTTCACAGCACAAGTTG---CTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAG 40577 Query 106569 TCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACT 106628 ||| |||| || |||||||| | |||| | ||| |||||||| |||| | | Sbjct 40578 ACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGT 40637 Query 106629 TGAGAATTGCCTTCCACACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCTCCGC 106686 ||||| || ||||| | || || | | ||| ||| || || || Sbjct 40638 CCAGAATAGCGAACCACAGCTGTTGAGCATTGATTGTCTTGCG--GGCGCGGCCTTCACG 40695 Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTG 106745 ||||||||| | || | || |||||||| ||| | || ||| | ||||| || | Sbjct 40696 CTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCC-CAGCACTCGTACAGACCGGGAG 40754 Query 106746 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 ||| || |||||||| | | ||| | ||| |||| || ||||||||||| || | Sbjct 40755 CCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGAT 40814 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTG 106864 | || | |||||| | | || | || | | ||| | || || ||| ||| ||||| Sbjct 40815 CCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGGTGCAGCT-CGTTACCATGGTTC 40873 Query 106865 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 106924 || | || | |||||| | | ||| |||||||| || || ||||| | || | Sbjct 40874 TTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAAT 40933 Query 106925 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 106981 |||||||| || || ||| | || | || || || || || ||||||| || || Sbjct 40934 GATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGC 40993 Query 106982 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGC 107040 ||||| || || || || | || || || || || || || || | ||| | || Sbjct 40994 AGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGT-AGCTGTTAGTAGC 41052 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 || | | || || || ||||| || || |||||||| ||||| |||||||| Sbjct 41053 TCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTG 41112 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | ||||| |||| || || | || ||||| |||| |||| | | |||||| Sbjct 41113 TTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGA 41172 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 107220 |||| || || | ||| |||||||||||||| || || || || ||||| |||| | Sbjct 41173 AGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAA 41232 Query 107221 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 ||| ||||| ||||| ||||| | | | | |||| | ||||||||| Sbjct 41233 TTTTTGCGACATGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGTCTTGTGGATGCC 41292 Query 107281 GATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTG 107340 | ||||| ||||| | ||| | ||||| ||||| | |||| | || || Sbjct 41293 TAGAGCCACGCGCATGATCATCTGCTGGGGACGTTCCACCACTTTGCCGTGGACACGGAA 41352 Query 107341 AAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||||| | | |||| || || || | ||||| ||| | | ||| |||| || Sbjct 41353 GAGATATCCCCTCTCCAGTGTCTTAAAGCCAAAATAATCGTATTCAAAGTCTCG 41406 >seq2405 Length=255098 Score = 120 bits (132), Expect = 4e-22 Identities = 330/500 (66%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||| ||||| || | || || | ||||| Sbjct 49117 TACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCATC 49058 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 117105 ||||||| || ||||| |||| | || | ||| |||| | || || || Sbjct 49057 CAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCGG 48998 Query 117106 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACAT 117165 || | ||| |||||||||||| | |||| | | |||||||| ||||| || | | Sbjct 48997 TCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCACT 48938 Query 117166 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 117225 ||||| | ||| | ||| | | || |||| || || || | || |||| Sbjct 48937 GGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTGC 48878 Query 117226 ATA----GTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 | | | | ||| || | |||| || || || | | | | ||||| | Sbjct 48877 ACACGCTGCTCCGGCAGCTTGGTC----AC-CAGCTTCGAGTACAACAGACAAGCAAAGT 48823 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| | ||| ||||| || ||| || || || ||||||| || || ||||||| Sbjct 48822 CTGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGA 48763 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 |||| |||||||| | ||| | || | ||| || || || ||||||||||| ||||||| Sbjct 48762 GACCACGCTTCTTGAGCCAGAAGATGGAGCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 48703 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTT-GTGTCAAACCATTTC 117459 || ||||| || | ||| ||||| | | | ||| || ||||| | ||| ||||| | Sbjct 48702 CAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAG-GACACTTTCGGGTCGCACCATCTT 48644 Query 117460 ATTGCCCATTTCGCCTTCTT 117479 | ||||| |||||||||| Sbjct 48643 AGCGCCCAACTCGCCTTCTT 48624 >seq2271 Length=33201 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 2435 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 2494 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 2495 CCGGTAGGAGCTT 2507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 3218 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 3277 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 3278 CCGGTAGGAGCTT 3290 >seq321 Length=97162 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGAC 169420 ||| ||||| || ||||| || || |||| || | |||||||||| ||||| | || Sbjct 24442 CTTACCACGCAGCGGAAATACACCGTAGTAGTCTCTCCCAACGACGGCAAGACCACCCAC 24383 Query 169421 CGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA---CTTTCCAGATTG 169477 || | ||||| |||||||||||||| || | || || || || ||| || | Sbjct 24382 AGCTACTGTTTTAGCTGAATCACCCTCTGTAAGGATAAGTGTGCAGTCCTTGCC---CTT 24326 Query 169478 CGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAA 169524 ||| || || || | ||| || ||||| | ||| |||||||| |||| Sbjct 24325 CGCAGTGCCGGCGTGGTTGGCATCGTCTAGCTTTGGAATACCCGTAA 24279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962938331280