Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2405 206 5e-48 seq918 197 3e-45 >seq2405 Length=255098 Score = 206 bits (228), Expect = 5e-48 Identities = 554/841 (66%), Gaps = 17/841 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | ||||| | ||||| Sbjct 49118 GTACTCGCCCACACGCTTCTCGAAGAAGTTAGTCTTGCCCTGTAGAGAGATCATGTCCAT 49059 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || || ||||| ||| || | | | || || | | | ||||||| | Sbjct 49058 CCAGTCAAACGGGTTCTTGACGTTGTAGATCTTGGACACACCAAGCGAATACAGCAGGCG 48999 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||| ||||| | ||||||| | ||||||||| || || ||| Sbjct 48998 GTCTGCCACGAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCGATCAGCTCCAC 48939 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | | |||||| | || |||| ||| || || | | ||||| | Sbjct 48938 TGGGAGCGAGTCGCTCACAAACTCGTGTTCGATCTTCACAGCGTCACGGATAATCTCGTG 48879 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 || || ||| | | ||| | ||| ||| | || | || || |||||||| Sbjct 48878 CACACGCTGCTCCGGCAGCTTGGTCACCAG---CTTCGAGTACAACAGACAAGCAAAGTC 48822 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 |||||| ||||| || || || |||||| |||||||||||| ||||||||||||| Sbjct 48821 TGTGTGCATACCTTCATCACGACTAATGAGCTCGTTGGAGAAGCTCAGACCAGGCATGAG 48762 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAG-AGCCAGAGAAGAAGATGCCCTCCA 48260 || | || ||||||||||| || | || |||| |||| ||||||||||| ||||||| Sbjct 48761 ACCACGCTTCTTGAGCCAGAAGATGGA-GCAAAAGGAGCCCGAGAAGAAGATTCCCTCCA 48703 Query 48261 CTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCAGG 48317 | || || || || || | ||| | | || | | ||| ||| | ||| Sbjct 48702 CAGCTGCAAATGCCAGAAGACGCTCCGGGTATGAGGACACTTTCGGGTC---GCACCATC 48646 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 |||||||| |||||||| | | || || || ||||| || || || | || | Sbjct 48645 TTAGCGCCCAACTCGCCTTCTTGGTCACACACGGGATGGTCTCAATTGCACGCAGCAGGT 48586 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 | ||| | |||||| | || || | |||||||| | ||||| ||| | Sbjct 48585 GGTCCTTCTCCACAGCGTCCTTGATGTACGTGTCAATGAGCAGC---GAGTACACCTCTG 48529 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || || || ||||| ||||||||| | |||||| |||||| | Sbjct 48528 AGTGGATGTTCTCAATGGCAATTTGGAAGCCGTAGAAGCAACGAGCCTCAGGCACCTGTA 48469 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 |||| || || || ||| ||||| || || || ||||| || ||||||| Sbjct 48468 CTTCATTGCTAAAGTTCATAGCCAGGTTCTCGTTCACGATGCCATCACTGGCGGCAAAGA 48409 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 |||| | ||| || || | ||| || |||||||||| ||||| |||| ||| | Sbjct 48408 AGGCCAAGACGTGCTTGATGAAGTGACGCTCGTTGTCTGTGAGGTTTCCCCAGTCCTTGA 48349 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||| | ||| ||||| |||||| ||||||||||| || || || ||||||| Sbjct 48348 GGTCGTGTACCAAGTCCAGCTCTTCCGCAGTCCAGAAGCTGGCCTCCGCCTTCTTGTACA 48289 Query 48675 T 48675 | Sbjct 48288 T 48288 >seq918 Length=42645 Score = 197 bits (218), Expect = 3e-45 Identities = 895/1401 (64%), Gaps = 36/1401 (3%) Strand=Plus/Plus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || ||| | || ||||| |||||| || || || |||||||| || Sbjct 39946 GTACATGTTAGAGGTGAACGGTTCGATAGACTCGTTATTACCGAGGATCTGTGCCGTAGA 40005 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 || || ||||| || || |||||||| || | || |||| || | | | Sbjct 40006 CGCCGTCGGCATCGGCGCGACCAGGAGCGAATTGCGCAGGCCGTTCTTGACCACCTTCTC 40065 Query 213068 CCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTC 213127 | |||| | ||||||||||| ||||| || | | | ||||||||||| || Sbjct 40066 CTTAAGCGCAGCCCAGTCCCA-----CAGACCGGAGGAAGGCGTG-ACGTTCCACATATC 40119 Query 213128 AAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC 213187 ||||| ||||| || ||||| | || |||||| ||| ||| ||||| || Sbjct 40120 GAACTGGAAGATACCCTTGCTGGCAGGCGAACCCTGGAAAGTCTCGTACGGGCCCAATTC 40179 Query 213188 CTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCT 213247 | ||||||| || |||| || || | ||||||||||||||| || || || | | | Sbjct 40180 CGTGGCCAGTTCCATTGACGTCTCCATAGAAGCGTAGTAGATGGTCTCGAAGATATTCTT 40239 Query 213248 GTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGC 213307 |||||||| ||||| || | ||| | | |||| | ||| | || || Sbjct 40240 GTTGAGCTCACGCGCCTCCGGACTCTCGAACGCAAAGTCCATGAGGATGAAAGCGTCCGC 40299 Query 213308 CAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCT 213366 || ||||| || || || || | || | ||| | || ||| || ||| |||| ||| Sbjct 40300 AAGGCCCTGCACACCAATACCAACAGGACGGTGACGCATGTTGGAATTGCGAGC-CTCAA 40358 Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA 213426 | |||||| ||||| |||||||| |||||| |||||||| ||| ||| ||| || Sbjct 40359 TAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCGTGTGATCACCTTGACGA 40418 Query 213427 CATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGG 213486 ||| ||| | || || ||||| ||| ||| || || |||| || || | Sbjct 40419 CATCATACAGCTTCTTGTAGTTGAATACG------GCGTTCTCAACGAACTTGGGGAGCG 40472 Query 213487 CGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGG 213546 | | | |||| |||||| ||||||||||| | || || |||||||| | || Sbjct 40473 CCACGGACGCCAAGTTGCACACGGCCACCTCATCAGGCGACGTATACTCCATCACTTCAC 40532 Query 213547 TGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAG 213606 ||||| |||||| | || || ||||| |||||||| || || ||||| |||||| | Sbjct 40533 AGCACAAGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGG 40592 Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCC 213666 |||||||| | |||| | || || ||||| | ||| | |||| || | || Sbjct 40593 CGTCCTTGTATAACATGAAAGGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACC 40652 Query 213667 AGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCG 213725 | || | || |||| | || | | ||| | | | |||||||| || Sbjct 40653 ACAGCTGTTGAGCATTGA----TTGTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCA 40708 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA--CAGGATGCGGGAC 213783 | ||| | ||| || | |||||| | || ||| || ||| | | | ||||| Sbjct 40709 AACAGCGTCTCGAACTCCTCTCCCCAGCACTCGTACAGACCGGGAGCCTCGTT--GGGAC 40766 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 | | | ||||| | || | | || | || |||||| || ||||| ||||||| Sbjct 40767 AGAACAAACTCCACTTGCCATTGGCCTCCACACGCTTCATGAATAGATCCGGCACCCACA 40826 Query 213844 GCGCGGTGAACAGGTC-CCTGGTC--CTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900 | || ||||| ||| | || | | ||||| ||| ||| |||||||||| Sbjct 40827 GAGCATAGAACAAGTCACGTGCACGGTGCAGCTCGT---TACCATGGTTCTTGCGCAGAT 40883 Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC-GGC 213959 | | || ||||| | || ||||||||||| |||| || || ||||| | ||| || Sbjct 40884 CCAAGAACTCAAACACATCAGCGTGCCACGGTTCCAGATAAATCGCAAATGATCCCTTGC 40943 Query 213960 CTCT--TGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTA 214017 | | || ||||||||||| | ||| ||| || | ||||| | ||| | Sbjct 40944 GTTTACCTCCACCCTGGTCCACGTAACGTGCCGTATCGTTAAACACTCGCAGCATGGGGA 41003 Query 214018 CCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC 214077 | ||||||||| ||||| || || || || | | || | | |||| Sbjct 41004 TGATGCCGTTGGACGAGCCGTTCGTGCCGCGGATGTAGCTGTTAGTAGCTCGGATGTTGT 41063 Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCT 214137 ||| || || ||||| || || |||||||||| || || | ||| ||| | Sbjct 41064 GCATACTGATGCCAATGCCTCCTGCCCACTTGGAGATGCACGCACACTGTTTCAGAGTGT 41123 Query 214138 CCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGG 214197 | ||||| | || |||||| | | || ||||||||| || | || | Sbjct 41124 CATAAATGCCTTCAATAGAGTCATCCTGCATGGCCAACAAGAAGCACGAAGACAATTGTG 41183 Query 214198 GCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA 214257 | | | | |||| ||||| ||||||||| |||| ||| | | || || | || | Sbjct 41184 GACGTGGGGTACCAGCATTGAACAGCGTGGGGGTGGCGTGGGTGAAGAATTTTTGCGACA 41243 Query 214258 GGAGCCTGTAGGTCTCCAGGACTGAGGGGATG-TCGTGCTTGTGGATCTGTAGAGCGCAC 214316 ||| ||| ||||| || | | |||| |||| ||||||||| |||||| ||| Sbjct 41244 TGAGTTCGTAAGTCTCAAGTGCCGCCTTGATGTTCGT-CTTGTGGATGCCTAGAGC-CAC 41301 Query 214317 -CTCATCAGCATGTGCTGGGG 214336 | ||| | ||| |||||||| Sbjct 41302 GCGCATGATCATCTGCTGGGG 41322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931504597844480