Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq918 127 6e-24 seq642 116 1e-20 seq2076 114 4e-20 >seq918 Length=42645 Score = 127 bits (140), Expect = 6e-24 Identities = 455/708 (64%), Gaps = 5/708 (1%) Strand=Plus/Plus Query 155667 ATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTAT 155726 || ||||| | |||| ||| ||||| || | ||| || |||||||||| ||| | Sbjct 40553 ATCGTGCCGAGGTTCTGCTGATTAGACTTGCGGTTGGCGGCGTCCTTGTATAACATGAAA 40612 Query 155727 GGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATT 155786 || || ||||| ||||| ||||||||||| | ||| || | | ||||| ||| Sbjct 40613 GGCACGCCCGTCTCAATCTGCGCGTCCAGAATAGCGAACCACAGCTGTTGAGCATTGATT 40672 Query 155787 TGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCG 155846 |||| | | |||||| ||| || ||| | ||||||| | | ||||| || Sbjct 40673 GTCTTGCGGGCGCGGCCTTCACGCTCGTACTTCTCAAACAGCGTCTCGAACTCCTCTCCC 40732 Query 155847 TAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCG 155906 | || || ||| || || || | ||| || |||| ||| | ||| | Sbjct 40733 CAGCACTCGTACAGACCGGGAGCCTCGTTGGGACAGAACAAACTCCACTTGCCATTGGCC 40792 Query 155907 ATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTT 155965 ||||||| ||| |||| ||| | |||| | ||||||||| | ||| | ||| | Sbjct 40793 TCCACACGCTTCATGAATAGATCCGGCACCCACAGAGCATAGAACAAGTCACGTGCACGG 40852 Query 155966 TGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTG 156025 || | ||| | || || ||||| || || || ||||| || | ||||| || Sbjct 40853 TG-CAGCTCGTTACCATGGTTCTTGCGCAGATCCAAGAACTCAAACACATCAGCGTGCCA 40911 Query 156026 TGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCG 156082 || |||||||| || ||||| || || | || |||||||| || || || || Sbjct 40912 CGGTTCCAGATAAATCGCAAATGATCCCTTGCGTTTACCTCCACCCTGGTCCACGTAACG 40971 Query 156083 AGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC 156142 || || | || || || | ||||| || || || || ||||| | ||| || || || Sbjct 40972 TGCCGTATCGTTAAACACTCGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTCGTGCC 41031 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||| || | || | || | || || ||| | ||||| || |||| ||| Sbjct 41032 GCGGATGTAGCTGTTAGTAGCTCGGATGTTGTGCATACTGATGCCAATGCCTCCTGCCCA 41091 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || || || || || | || | ||| | |||| ||||||||||| ||||| | Sbjct 41092 CTTGGAGATGCACGCACACTGTTTCAGAGTGTCATAAATGCCTTCAATAGAGTCATCCTG 41151 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 ||| | | | |||||||| ||||| || ||||| || ||||| ||||| || || Sbjct 41152 CATGGCCAACAAGAAGCACGAAGACAATTGTGGACGTGGGGTACCAGCATTGAACAGCGT 41211 Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 || || || || | || | || | ||||| ||||| ||||| Sbjct 41212 GGGGGTGGCGTGGGTGAAGAATTTTTGCGACATGAGTTCGTAAGTCTC 41259 >seq642 Length=51138 Score = 116 bits (128), Expect = 1e-20 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 |||||||| |||| |||||| ||||||||||| || | |||||||||||| |||||||| Sbjct 39188 CCGTGTGAGATCAGACAATCGCGCTCCATTTCTCCCATACGAAGACCACCCTCGCGAGCA 39247 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| |||||||| || || | || ||||| || || || | Sbjct 39248 CGACCCTCCATGGGCTGACGCGTCAGCATCGTCACGGGACCACGCGACCGAGAGTGAATC 39307 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGAA 251667 || || | ||||||||||| | ||||||||||||| || ||||||||||| | | Sbjct 39308 TTGTCGTCGACCATATGCTTCAAGCGCTGGTAGAATGTCGGGCCGATGAAGATCTGTGCA 39367 Query 251668 GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCC 251711 | || | ||||| || | ||||||| |||||||| || Sbjct 39368 GTCAGCCGGCGGCCAGTATGACCACTATACATGACTTCGTTGCC 39411 >seq2076 Length=85087 Score = 114 bits (126), Expect = 4e-20 Identities = 261/385 (68%), Gaps = 16/385 (4%) Strand=Plus/Minus Query 302490 GTCAATTCCGTCATCGCCGTA--GGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTAC 302546 ||| || || || ||||| || ||||| |||||||||| | |||| ||||| || Sbjct 23741 GTCCATACCATCCTCGCCATAAAGGAAT--TGAATGATTTCGC-CTTGCGCATTTCGAAC 23685 Query 302547 GGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATA 302606 || ||| || | |||||| | |||||| ||| | | || |||||||| || Sbjct 23684 CGTACCATCGTATCTCGTCATAACGGACTCCATAGCCTTCACCAGTCGGCGCTGAATGTA 23625 Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 || ||| || || || |||||||||||||| | ||| ||||||||||||| || || Sbjct 23624 TCCCGTTTCAGCGGTCTTGACAGCTGTATCAATCAAACCTTCACGACCACCCATGGCGTG 23565 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| | || || ||| | | || |||| ||||||||||| Sbjct 23564 GAAGAAGAACTCCTGTGGGGTCAGACCCTTCAAGTACGAATTCTCCACGAAACCACGACT 23505 Query 302727 CTCGGG---CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTA 302783 ||||| | |||||| ||| |||| || || || | | | | ||||| Sbjct 23504 TTCGGGGCCCAGATCGTC---TTTGCCGTAGTGCGGAAGTGTACGATGGTTGAAACCGTA 23448 Query 302784 TGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| || || || || |||||||| |||| || | ||| |||||||| || || Sbjct 23447 CGGGATACGTTTACCTTCGACATTCTGCTGACCCACACAAGCAATAATCTGCGAGATGTT 23388 Query 302844 --TAAATCACTGCCCTTGGAGCCAG 302866 |||| | |||||||| |||| Sbjct 23387 AATAAAGGA--ACCCTTGGAACCAG 23365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471771926740214