Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq542 102 2e-16 >seq542 Length=20326 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || ||||| ||| ||| Sbjct 668 CAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 609 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || || ||||| || ||||| || ||| ||| || Sbjct 608 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 549 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 548 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 489 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| |||||||| || Sbjct 488 CAGAAGGAGTCTACACTTCACCTGGT 463 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| | || ||||| ||| ||| Sbjct 4540 CAGATCTTTGTGAAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGAC 4599 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || || ||||| || ||||| || ||| ||| || Sbjct 4600 TCGATCGACAATGTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 4659 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 4660 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATC 4719 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| |||||||| || Sbjct 4720 CAGAAGGAGTCTACACTTCACCTGGT 4745 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| ||| ||| | |||| Sbjct 200 AAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGACTCGATCGACAAT 141 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || ||||| || ||| ||| || | || |||||| Sbjct 140 GTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 81 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 80 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 21 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 20 ACACTTCACCTGGT 7 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| ||| ||| | |||| Sbjct 428 AAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGACTCGATCGACAAT 369 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || ||||| || ||| ||| || | || |||||| Sbjct 368 GTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 309 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 308 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 249 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 248 ACACTTCACCTGGT 235 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| ||| ||| | |||| Sbjct 4780 AAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGACTCGATCGACAAT 4839 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || ||||| || ||| ||| || | || |||||| Sbjct 4840 GTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 4899 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 4900 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 4959 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 4960 ACACTTCACCTGGT 4973 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| ||| ||| | |||| Sbjct 5008 AAGACACTGACGGGCAAGACCATCACGCTCGACGTGGAGCCTTCGGACTCGATCGACAAT 5067 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| || || ||||| || ||||| || ||| ||| || | || |||||| Sbjct 5068 GTGAAGCAGAAAATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAGCGTCTGATCTTC 5127 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| |||||| Sbjct 5128 GCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCT 5187 Query 206365 ACTCTTCACCTTGT 206378 || |||||||| || Sbjct 5188 ACACTTCACCTGGT 5201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181784125884662