Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2405 284 2e-70 seq204 127 3e-23 seq2277 120 4e-21 seq857 116 5e-20 seq2105 114 2e-19 >seq2405 Length=255098 Score = 284 bits (314), Expect = 2e-70 Identities = 421/587 (72%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTAC 1455790 || |||||||||||||| || || |||||||||| | || | ||| | |||||| Sbjct 48234 GAAAACCCGAACCGCTTCGTGCTATTCCCCATCCAGGAGCACGACGTGTGGCAGATGTAC 48293 Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC---AC 1455847 || ||||| |||||| ||| ||||| || || ||| | ||| | | |||| | Sbjct 48294 -AAGAAGGCGGAGGCCAGCTTCTGGACTGCGGAAGAGCTGGACTTGGTACACGACCTCAA 48352 Query 1455848 GGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 || |||||| || | ||| ||||||| || ||||||||||||||| | ||||| Sbjct 48353 GG---ACTGGGGAAACCTCACAGACAACGAGCGTCACTTCATCAAGCACGTCTTGGCCTT 48409 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 ||| |||||||| |||||||||||| |||||||||||| ||||| || || | Sbjct 48410 CTTT-GCCGCCAGTGATGGCATCGTGAACGAGAACCTGGCTATGAACTTTAGCAATGAAG 48468 Query 1455968 TCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACT 1456027 | || |||| ||||| |||| || ||||| ||||| || ||||| || |||||||||| Sbjct 48469 TACAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGAGAACATCCACT 48528 Query 1456028 CTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACC 1456087 | || |||||||| || || ||||| ||| |||||||| | || ||||||||||||| Sbjct 48529 CAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGAGAAGGACCACC 48588 Query 1456088 TCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGT 1456147 | | || || || || || | |||| |||| || ||||| |||||| | | | Sbjct 48589 TGCTGCGTGCAATTGAGACCATCCCGTGTGTGACCAAGAAGGCGAGTTGGGCGCTAAGAT 48648 Query 1456148 GGATCAACAAGGA--GGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTC 1456204 || | || | | | |||| | || | ||||| || | | ||||| || || Sbjct 48649 GGTGCGACCCGAAAGTGTCCTC-ATAC---CCGGAGCGTCTTCTGGCATTTGCAGCTGTG 48704 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 ||||| ||||| ||||||||| || ||| ||||||| |||||||||||||| || ||| Sbjct 48705 GAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTC 48764 Query 1456265 ATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||||| |||| | |||| |||||| | || ||||| || |||| Sbjct 48765 ATGCCTGGTC-TGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAG 48810 Score = 181 bits (200), Expect = 2e-39 Identities = 244/330 (74%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-A 1456505 |||| ||||| |||||||| |||||| | ||| ||| ||| || | ||||| | || | Sbjct 48809 AGGTATGCACACAGACTTTGCTTGTCTGTTGTACTCGAAGCTGGTGACCAAGCTGCCGGA 48868 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 | |||| || | |||| ||| || || || ||||||| | |||||||| |||| Sbjct 48869 GCAGCGTGTGCACG-AGATTATCCGTGACGCTGTGAAGATCGAACACGAGTTTGTGAGCG 48927 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAA 1456625 | ||||| || |||| ||| |||||||||||| | ||||||||||||||||||||| | Sbjct 48928 ACTCGCTCCCAGTGGAGCTGATCGGCATGAAC-TCGGCGCTCATGTGCCAGTACATTG-A 48985 Query 1456626 TTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-- 1456683 || || || ||||||||||| |||| || || | ||| |||| ||| | Sbjct 48986 GTTCGTGGCAGACCGCCTGCTGTATTCGCTTGG-TGTGTCCAAGATCTAC--AACGTCAA 49042 Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 |||||||| |||||||| ||||||| || |||||||||| ||||| |||||| Sbjct 49043 GAACCCGTTTGACTGGATGGACATGATCTCTCTACAGGGCAAGACTAACTTCTTCGAGAA 49102 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || || ||||||||| ||||||| ||||| Sbjct 49103 GCGTGTGGGCGAGTACTCCAAGGCAGGCGT 49132 >seq204 Length=136325 Score = 127 bits (140), Expect = 3e-23 Identities = 176/245 (72%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||||| ||||||||||| || | | | Sbjct 108768 TCGTACTCCACCTACATCTACAAGGTGCTGCGTCAGGTGCACCCTGAGACGGGT-----A 108714 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | |||||||||||||||||||| |||||||||| |||| |||||| Sbjct 108713 TCAGCAAGCGGGGC-ATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATC 108655 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | |||||||| ||| |||| | ||||||| ||| | || |||||| Sbjct 108654 GCGTCGGAGGCCGGCAAGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGCGAG 108595 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| || ||||| || || ||| || || || |||| ||||||||| || ||| Sbjct 108594 ATCCAGACGGCTGTGCGTCTCATGCTGCCTGGTGAGCTTGCCAAGCACGCCGTGTCGGAG 108535 Query 725136 GGCAC 725140 ||||| Sbjct 108534 GGCAC 108530 >seq2277 Length=161613 Score = 120 bits (132), Expect = 4e-21 Identities = 176/248 (71%), Gaps = 12/248 (5%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||||| |||||||||||| || | | | Sbjct 159296 TCGTACTCTACCTACATCTACAAGGTGCTGCGCCAGGTGCACCCCGAGACGGGT-----A 159350 Query 724956 TCCTCCAACAAGTCC---ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGC 725012 || | |||| | |||||||||||||||||||| |||||||||| |||| ||| Sbjct 159351 TC----AGCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGC 159406 Query 725013 ATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC 725072 || | | ||||||||| ||| |||| | ||||||| ||| | || || Sbjct 159407 ATTGCGTCGGAGGCCGGTAAGCTGTCGCGTTACAACAAGAAGTCGACGCTGTCCAGCCGT 159466 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||||||||||| || ||||| || || | | || || ||||||| ||||||||| || Sbjct 159467 GAGATCCAGACTGCTGTGCGTCTCATGCTCCCGGGTGAGCTGGCCAAGCACGCCGTGTCT 159526 Query 725133 GAGGGCAC 725140 || ||||| Sbjct 159527 GAAGGCAC 159534 >seq857 Length=26912 Score = 116 bits (128), Expect = 5e-20 Identities = 197/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 1152833 CCGTCGTAGGGCTGCTTGCGCGCGATGATCTCCCACATGACGACGCCAAACGAGTAGACA 1152892 |||||||| || || || || || ||||||||| ||||||| ||| |||||| | ||| Sbjct 7123 CCGTCGTACGGACACTCGCCCGTGACGATCTCCCAGATGACGATGCCGAACGAGAACACA 7182 Query 1152893 TCGGCCTTTTCCGAATACTTTTCGCCGCGCAAGATCTCGGGCGCCGTCCACGCCGGCGTG 1152952 |||||||| |||| ||||| | | || || | || |||||| ||||| | || Sbjct 7183 TCGGCCTTCTCCGTGTACTTCTGGTTGCCCAGCACTTCTGGCGCCATCCACTGCACAGTC 7242 Query 1152953 CCGCAG---CGGGTCATCGT---CGCATTGTCCTGGCGGATGCGGGCAAAGCCAAAGTCG 1153006 |||||| | ||||| || | ||| ||| || || |||| ||||||||| Sbjct 7243 CCGCAGTTACCTGTCATGGTCTGCACATGAGCCT---TGACTCGAGCAAGGCCAAAGTCT 7299 Query 1153007 GCCACCTTGACGGTGAAATTGTCGTCGACGAGCAGGTTGGACGACTTTTGGAGGTCGCGG 1153066 | | |||| | |||| || | ||| || |||| ||||| |||| || |||||| ||| Sbjct 7300 GAAAGTTTGATGTTGAAGTTCTTGTCCACCAGCAAGTTGG--GACTCTT-GAGGTCTCGG 7356 Query 1153067 TGCACGATCGGCCGTTCGCGCCCGTGCAGATAGGCCACGCC 1153107 |||| ||||| ||||| ||||||||| | || ||| Sbjct 7357 TGCAGAATCGGTCGTTCAAAGTGGTGCAGATACGACATGCC 7397 >seq2105 Length=56550 Score = 114 bits (126), Expect = 2e-19 Identities = 254/375 (68%), Gaps = 6/375 (2%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 ||||| || |||||||| || ||||| | || || || | | | | || |||| ||| Sbjct 7326 AAGCGTAGAATGGCACAGCGACTCTGGATGGGTTCAATAATCTTGGTAGAATTGTTACAG 7267 Query 332933 GCCAGGGCAAACCGCGTCGTAT-TGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||||| || ||||| || || || | | | | |||| || || || ||||| || Sbjct 7266 GCCAGAGCGAACCGTGTGGTGGCTGAGAAGATCT-CCATAGTGCGGCGTAGAGCCTGCTG 7208 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 || || | ||| | | |||| |||||||| ||||||| |||||||||||| || |||| Sbjct 7207 CGCTGCTGCCGTCATGGAGTCTGCCTCGTCCAGGATGACGATCTTGTGGCGTCCAGGCGG 7148 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| | | |||| ||||| | |||| || ||| | ||| || Sbjct 7147 CAGCGTCACCTTCTGTTGGGCGAACATCTTGATCTTGCTGCGTACAGTGTCGATGCCTCG 7088 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCT-CGTC-GGCGGCCGCACCCAAGAGGACG 333169 ||||||||||||||||| || ||||| |||| | || | | | || | || | Sbjct 7087 GTCGTCCGACGCGTTGAGCTCCAGCACCGCCTGCTTCATACTGTTG--CCTAGAAGTTCC 7030 Query 333170 CGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGG 333229 || |||| ||| |||||| ||||| || || || || || || |||| || | || Sbjct 7029 CGAGCCAAACACAAGATGCTGGTGGTTTTACCGGTTCCTGGAGGGCCCGAGAGGATCAGA 6970 Query 333230 TTGGGCATGTTGCCG 333244 || | |||||| ||| Sbjct 6969 TTCGTCATGTTACCG 6955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177577593648364