Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20kernoviae_20[genbank_20GCA_5F001712655.1_202016-08- 24] 2,422 sequences; 38,111,184 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1680 165 6e-36 seq2405 98.7 8e-16 >seq1680 Length=186158 Score = 165 bits (182), Expect = 6e-36 Identities = 321/465 (69%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 40857 AGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAA 40916 ||||| | ||| || || || || ||||||||||| |||| ||| || |||||||| || Sbjct 180291 AGGGAAGTAGGAGACCTGGGACCAGTTTATGGATTCCAGTGGCGTCACTTTGGAGCCAAG 180350 Query 40917 TATGACAC---TATGTACTCTGATTATACCAATAAAGGAATGGATCAA-TTACAGTGCGT 40972 || ||| |||| | | || || || |||| |||||||| || | | | || Sbjct 180351 TA---CACGGATATGCATGCAGACTACACTGGACAAGGGGTGGATCAACTTGCTGAG-GT 180406 Query 40973 TATAGATACGATTAAATCCGATCCCGATAG-CCGACGTATAATATTGTGCGCGTGGAACC 41031 || | | ||| ||| ||||| | ||| || || | |||| |||||||| | Sbjct 180407 GATCCACAA-ATTGCGCACGAACCCGACCGACCGTCGGATTGTGTTGTCTGCGTGGAATC 180465 Query 41032 CAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTT 41091 | | || | || |||||| ||||||| ||||| |||| |||||||||||||| Sbjct 180466 CGGCAGATCTCAATGAGATGGCGCTGCCACCATGTCACATGTTTTGTCAGTTTTACGTGG 180525 Query 41092 GCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCC 41151 |||| ||| |||| || ||| |||| || | |||| ||||||||| || || || | Sbjct 180526 CGGATGGCGAATTGTCGTGCCAAATGTACCAGCGTTCAGCTGACATGGGCCTCGGCGTGC 180585 Query 41152 CGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAA 41211 |||| ||||| || |||||||| || || ||| | | || || || | ||| | Sbjct 180586 CGTTCAACATCGCCAGTTATGCGCTACTGACGCGACTTGTGGCCCAAGTGGCTGGTTTGA 180645 Query 41212 AACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGC 41271 || |||| |||||| | |||| | || |||| ||| | ||| | || |||||||||| Sbjct 180646 AATCTGGCGAATTTATCCACATTATTGGTGATGCACACGTATACCTGAACCACATAGAGC 180705 Query 41272 CGTTAACAGAA-CAACTGACACGAAAACCTAGACCATTTCCAACG 41315 || | ||||| || || || || | || |||||||||| ||| Sbjct 180706 CGCT-TCAGAAGCAGCTAACGCGCACCCCGCGACCATTTCCCACG 180749 >seq2405 Length=255098 Score = 98.7 bits (108), Expect = 8e-16 Identities = 292/444 (66%), Gaps = 11/444 (2%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| || ||||| || || || || || || || || || ||| || ||| Sbjct 48399 GTCTTGGCCTTCTTTGCCGCCAGTGATGGCATCGTGAACGAGAACCTGGCTATGAACTTT 48458 Query 43910 GCGCAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 |||| ||||| || | || || || || || || || || || ||||||||||| || Sbjct 48459 A-GCAATGAAGTACAGGTGCCTGAGGCTCGTTGCTTCTACGGCTTCCAAATTGCCATTGA 48517 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 || || || || || ||||| || || || || ||||||||||| || | || Sbjct 48518 GAACATCCACTCAGAGGTGTACTCGCTGCTCATTGACACGTACATCAAGGACGCTGTGGA 48577 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACT- 44087 |||| | | || | ||| || || || | || | | | | || ||| || | Sbjct 48578 GAAGGACCACCTGCTGCGTGCAATTGAGACCATCCC-GTGTGTGACCAAGAAGGCGAGTT 48636 Query 44088 GGGCCCTTAAATGGATAAATTCAAATGATTCTTTT-----GGAGAACGACTTGTCGCGTT 44142 |||| || | |||| | | || | || | |||| || ||| | || || Sbjct 48637 GGGCGCTAAGATGGTGCGACCCGAAAGTGTCCTCATACCCGGAG--CGTCTTCTGGCATT 48694 Query 44143 TGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAA 44202 ||||| |||||| || || ||||| || || || ||| |||| || ||| | ||||| Sbjct 48695 TGCAGCTGTGGAGGGAATCTTCTTCTCGGGCTCCTTTTGCTCCATCTTCTGGCTCAAGAA 48754 Query 44203 ACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTT 44262 || ||| | |||||||| ||| || || || ||| | || |||||||||||||| | Sbjct 48755 GCGTGGTCTCATGCCTGGTCTGAGCTTCTCCAACGAGCTCATTAGTCGTGATGAAGGTAT 48814 Query 44263 ACATTGCGATTTTGCTTGCTTGTT 44286 || || |||||||| |||| Sbjct 48815 GCACACAGACTTTGCTTGTCTGTT 48838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444267844110